Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YoeB-YefM
Location 1617603..1618108 Replicon chromosome
Accession NZ_CP043929
Organism Methylomonas rhizoryzae strain GJ1

Toxin (Protein)


Gene name relB Uniprot ID -
Locus tag F1E05_RS07480 Protein ID WP_150047701.1
Coordinates 1617603..1617857 (-) Length 85 a.a.

Antitoxin (Protein)


Gene name relE Uniprot ID -
Locus tag F1E05_RS07485 Protein ID WP_150047702.1
Coordinates 1617854..1618108 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
F1E05_RS07465 1614491..1615621 - 1131 WP_150047699.1 DUF1887 family protein -
F1E05_RS07470 1615729..1616202 - 474 WP_150051850.1 transposase -
F1E05_RS07475 1616252..1617508 - 1257 WP_150047700.1 TIGR02710 family CRISPR-associated protein -
F1E05_RS07480 1617603..1617857 - 255 WP_150047701.1 Txe/YoeB family addiction module toxin Toxin
F1E05_RS07485 1617854..1618108 - 255 WP_150047702.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
F1E05_RS07490 1618215..1618574 - 360 WP_150047703.1 CRISPR-associated protein Csx16 -
F1E05_RS07495 1618577..1619992 - 1416 WP_190303275.1 type III-A CRISPR-associated RAMP protein Csm5 -
F1E05_RS07500 1620078..1621034 - 957 WP_150047705.1 type III-A CRISPR-associated RAMP protein Csm4 -
F1E05_RS07505 1621036..1621827 - 792 WP_150047706.1 type III-A CRISPR-associated RAMP protein Csm3 -
F1E05_RS07510 1621843..1622220 - 378 WP_150047707.1 type III-A CRISPR-associated protein Csm2 -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10045.48 Da        Isoelectric Point: 9.3611

>T139472 WP_150047701.1 NZ_CP043929:c1617857-1617603 [Methylomonas rhizoryzae]
MILAWATTAWDDYLYGQATDKKLLKRINTLIEDIKRHPFTGIGDPEPLKHHWSGYWSRRIDREHRLVYKADTATVTIVQC
RYHY

Download         Length: 255 bp

>T139472 NZ_CP058709:849414-849521 [Escherichia coli]
ATGACGCTCGCGCAGTTTGCCATGACTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGGATTATTACCGCAGCGAT
TGTCAGCTGGTGGCGTAACCGGAAGTAA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9288.47 Da        Isoelectric Point: 4.5026

>AT139472 WP_150047702.1 NZ_CP043929:c1618108-1617854 [Methylomonas rhizoryzae]
MDTINYSTLRSNLASILDKVNDDHNPVLVTRQNGKPAVILSLEDYKSFEETAYLMASPVNAQRLNQAIAEVEAGKAVTRD
LIEP

Download         Length: 255 bp

>AT139472 NZ_CP058709:c849367-849301 [Escherichia coli]
TGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References