Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VII | Classification (family/domain) | HepT-MntA/HepT(toxin) |
Location | 1618102..1618933 | Replicon | chromosome |
Accession | NZ_CP043902 | ||
Organism | Shewanella sp. LC6 |
Toxin (Protein)
Gene name | hepT | Uniprot ID | - |
Locus tag | FJD32_RS07295 | Protein ID | WP_088585313.1 |
Coordinates | 1618102..1618518 (-) | Length | 139 a.a. |
Antitoxin (Protein)
Gene name | mntA | Uniprot ID | - |
Locus tag | FJD32_RS07300 | Protein ID | WP_140907854.1 |
Coordinates | 1618511..1618933 (-) | Length | 141 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
FJD32_RS07285 | 1614310..1616250 | + | 1941 | WP_140907858.1 | polysaccharide biosynthesis protein | - |
FJD32_RS07290 | 1616354..1617706 | + | 1353 | WP_140907853.1 | phosphoglucosamine mutase | - |
FJD32_RS07295 | 1618102..1618518 | - | 417 | WP_088585313.1 | DUF86 domain-containing protein | Toxin |
FJD32_RS07300 | 1618511..1618933 | - | 423 | WP_140907854.1 | nucleotidyltransferase domain-containing protein | Antitoxin |
FJD32_RS07305 | 1619341..1619601 | + | 261 | WP_055647496.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
FJD32_RS07310 | 1619603..1619950 | + | 348 | WP_055647497.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
FJD32_RS07315 | 1620162..1621370 | + | 1209 | WP_140907855.1 | molecular chaperone DnaJ | - |
FJD32_RS07320 | 1621490..1621696 | - | 207 | WP_014610942.1 | hypothetical protein | - |
FJD32_RS07325 | 1622164..1622580 | - | 417 | WP_126512853.1 | type II toxin-antitoxin system YafO family toxin | - |
FJD32_RS07330 | 1622592..1622885 | - | 294 | WP_086904668.1 | antitoxin of toxin-antitoxin stability system | - |
FJD32_RS07335 | 1622961..1623179 | + | 219 | WP_088585318.1 | transposase | - |
FJD32_RS07340 | 1623183..1623617 | + | 435 | WP_088585319.1 | transposase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 139 a.a. Molecular weight: 16056.55 Da Isoelectric Point: 7.3244
>T139448 WP_088585313.1 NZ_CP043902:c1618518-1618102 [Shewanella sp. LC6]
MNDIIINKIATIKRCIKRIQQVYGDGSMFKQDFTLQDSVILNLQRCCEASIDIANHINRQQQLGIPQSSRDSFTLLSQNK
IINQQLADNLKKMVGLRNIAVHDYQELNLDIVVHVVQHHLEDFEQFIEVIKFCPRMSY
MNDIIINKIATIKRCIKRIQQVYGDGSMFKQDFTLQDSVILNLQRCCEASIDIANHINRQQQLGIPQSSRDSFTLLSQNK
IINQQLADNLKKMVGLRNIAVHDYQELNLDIVVHVVQHHLEDFEQFIEVIKFCPRMSY
Download Length: 417 bp
>T139448 NZ_CP058682:4321561-4321779 [Escherichia coli]
ATGTCCGAAAAACCTTTAACGAAAACCGATTATTTAATGCGTTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGTGT
TATCGAGAAAAATAAATACGAATTATCAGATAATGAACTGGCGGTATTTTACTCAGCCGCAGATCACCGCCTCGCCGAAT
TGACCATGAATAAACTATACGACAAGATCCCTTCCTCAGTATGGAAATTTATTCGCTAA
ATGTCCGAAAAACCTTTAACGAAAACCGATTATTTAATGCGTTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGTGT
TATCGAGAAAAATAAATACGAATTATCAGATAATGAACTGGCGGTATTTTACTCAGCCGCAGATCACCGCCTCGCCGAAT
TGACCATGAATAAACTATACGACAAGATCCCTTCCTCAGTATGGAAATTTATTCGCTAA
Antitoxin
Download Length: 141 a.a. Molecular weight: 15889.94 Da Isoelectric Point: 5.1231
>AT139448 WP_140907854.1 NZ_CP043902:c1618933-1618511 [Shewanella sp. LC6]
MQQLNESIIINLLQDNIPQLRLIYLFGSYAQGTQHRNSDIDIAVLADVTLDNIARWQLAQKLASVLDTDVDLVDLRTAST
VLCQQVVTQGKRLWGTRQDDEIFAVKTISMYQHLQAERQAIIDDATAKTTANDHRGRHFE
MQQLNESIIINLLQDNIPQLRLIYLFGSYAQGTQHRNSDIDIAVLADVTLDNIARWQLAQKLASVLDTDVDLVDLRTAST
VLCQQVVTQGKRLWGTRQDDEIFAVKTISMYQHLQAERQAIIDDATAKTTANDHRGRHFE
Download Length: 423 bp
>AT139448 NZ_CP058682:4321161-4321535 [Escherichia coli]
ATGGATGAATACTCACCCAAAAGACATGATATCGCACAGCTTAAGTTTCTCTGTGAAACCCTGTATCATGACTGTCTTGC
AAACCTTGAAGAAAGCAATCATGGCTGGGTTAACGACCCAACCTCGGCGATCAACCTCCAGTTGAATGAACTGATTGAGC
ATATTGCGACCTTCGCACTTAATTACAAAATTAAGTATAATGAAGACAATAAGCTCATTGAGCAGATCGACGAATATCTG
GATGACACCTTTATGTTGTTCAGCAGTTATGGTATTAATATGCAGGATCTTCAGAAATGGCGGAAGTCAGGTAATCGACT
ATTCCGTTGTTTTGTCAATGCGACGAAAGAGAATCCTGCGAGTTTATCTTGTTAG
ATGGATGAATACTCACCCAAAAGACATGATATCGCACAGCTTAAGTTTCTCTGTGAAACCCTGTATCATGACTGTCTTGC
AAACCTTGAAGAAAGCAATCATGGCTGGGTTAACGACCCAACCTCGGCGATCAACCTCCAGTTGAATGAACTGATTGAGC
ATATTGCGACCTTCGCACTTAATTACAAAATTAAGTATAATGAAGACAATAAGCTCATTGAGCAGATCGACGAATATCTG
GATGACACCTTTATGTTGTTCAGCAGTTATGGTATTAATATGCAGGATCTTCAGAAATGGCGGAAGTCAGGTAATCGACT
ATTCCGTTGTTTTGTCAATGCGACGAAAGAGAATCCTGCGAGTTTATCTTGTTAG
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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