Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relB-yefM/YoeB-RelB |
Location | 1562597..1563113 | Replicon | chromosome |
Accession | NZ_CP043869 | ||
Organism | Neptunomonas concharum strain JCM17730 |
Toxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | F0U83_RS07305 | Protein ID | WP_170221883.1 |
Coordinates | 1562844..1563113 (+) | Length | 90 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | - |
Locus tag | F0U83_RS07300 | Protein ID | WP_138988352.1 |
Coordinates | 1562597..1562851 (+) | Length | 85 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
F0U83_RS07275 | 1557824..1558963 | + | 1140 | WP_138988357.1 | DUF4935 domain-containing protein | - |
F0U83_RS07280 | 1559125..1560837 | + | 1713 | WP_138988356.1 | hypothetical protein | - |
F0U83_RS07285 | 1560850..1561362 | + | 513 | WP_138988355.1 | hypothetical protein | - |
F0U83_RS07290 | 1561378..1561929 | + | 552 | WP_138988354.1 | hypothetical protein | - |
F0U83_RS07295 | 1561926..1562348 | + | 423 | WP_170221885.1 | NUDIX domain-containing protein | - |
F0U83_RS07300 | 1562597..1562851 | + | 255 | WP_138988352.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin |
F0U83_RS07305 | 1562844..1563113 | + | 270 | WP_170221883.1 | Txe/YoeB family addiction module toxin | Toxin |
F0U83_RS07310 | 1563339..1563629 | - | 291 | WP_138988350.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
F0U83_RS07315 | 1563622..1563843 | - | 222 | WP_012518669.1 | hypothetical protein | - |
F0U83_RS16955 | 1564043..1564189 | + | 147 | WP_170221881.1 | hypothetical protein | - |
F0U83_RS07320 | 1564446..1564838 | + | 393 | WP_138988349.1 | GFA family protein | - |
F0U83_RS07325 | 1564835..1565398 | + | 564 | WP_138988348.1 | Crp/Fnr family transcriptional regulator | - |
F0U83_RS07330 | 1565468..1565986 | + | 519 | WP_138988347.1 | DUF1772 domain-containing protein | - |
F0U83_RS07335 | 1566075..1566473 | - | 399 | WP_138988346.1 | VOC family protein | - |
F0U83_RS07340 | 1566553..1567416 | - | 864 | WP_138988345.1 | MBL fold metallo-hydrolase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 90 a.a. Molecular weight: 10605.95 Da Isoelectric Point: 7.9757
>T139422 WP_170221883.1 NZ_CP043869:1562844-1563113 [Neptunomonas concharum]
MSSSQYLLSWTDAAWDDYLYWQTQDKKTLKRINKLINDVRRSPFEGIGKPEPLKENLSGFWSRRIDDTNRLVYAVDDQAI
TIISCRYHY
MSSSQYLLSWTDAAWDDYLYWQTQDKKTLKRINKLINDVRRSPFEGIGKPEPLKENLSGFWSRRIDDTNRLVYAVDDQAI
TIISCRYHY
Download Length: 270 bp
>T139422 NZ_CP058671:c3215233-3214946 [Salmonella enterica]
ATGCCGATGGAGTTTGAATGGGATGCGAACAAGGCTAAAAGCAACCTGAGGAAGCACGGTGTCCGCTTTGAGGATGCAGT
ACTGGTGTTTGACGATCCCCGACACCTGTCACGTCAGGAGCGTTATGAGAATGGAGAATATCGTTGGCAGACCCTCGGCC
TTGTTCATGGCATTGTGGTCATTCTGGTTGCTCATAGCGTTCGGTTCGAAAGTGGTTTTGAAGTTATCCGTATCATCAGC
GCCCGCAAGGCAGACAGAAAAGAGAGGAATCGTTATGAGCATGGTTAA
ATGCCGATGGAGTTTGAATGGGATGCGAACAAGGCTAAAAGCAACCTGAGGAAGCACGGTGTCCGCTTTGAGGATGCAGT
ACTGGTGTTTGACGATCCCCGACACCTGTCACGTCAGGAGCGTTATGAGAATGGAGAATATCGTTGGCAGACCCTCGGCC
TTGTTCATGGCATTGTGGTCATTCTGGTTGCTCATAGCGTTCGGTTCGAAAGTGGTTTTGAAGTTATCCGTATCATCAGC
GCCCGCAAGGCAGACAGAAAAGAGAGGAATCGTTATGAGCATGGTTAA
Antitoxin
Download Length: 85 a.a. Molecular weight: 9441.59 Da Isoelectric Point: 5.0622
>AT139422 WP_138988352.1 NZ_CP043869:1562597-1562851 [Neptunomonas concharum]
MKIVSFTEARNSLKAVLDGVVNDADTTVITRRDSEDAVVMSLDYYNSLMETVHLLRSPQNAEHLNRSIAQYRAGKTTARE
LVDE
MKIVSFTEARNSLKAVLDGVVNDADTTVITRRDSEDAVVMSLDYYNSLMETVHLLRSPQNAEHLNRSIAQYRAGKTTARE
LVDE
Download Length: 255 bp
>AT139422 NZ_CP058671:c3214959-3214657 [Salmonella enterica]
ATGAGCATGGTTAAACATAAACGCGGCAACGCATCCGCGCTGAGTGCTCAGCATGAGGCTGAACTGAAGGCGCTGGTGAA
AAAATCAGATGATGAGATTGATTACAGCGACATTCCCGCTTCGGAGGATGGGCAGTGGTCTGAAGCAGTGCGTGGTAAGT
TTTTTCGCCCGTTAAAAACTCAGGCCTCGGTGCGTATTGACGCCGATGTGATGGAGTGGCTGAAACGGCCAGGAAAAGGC
TACCAGACGCGGCTCAATGCCATTCTGCGCGAGGCGATGCTGCGCGAGCAAAATAAGAAATAG
ATGAGCATGGTTAAACATAAACGCGGCAACGCATCCGCGCTGAGTGCTCAGCATGAGGCTGAACTGAAGGCGCTGGTGAA
AAAATCAGATGATGAGATTGATTACAGCGACATTCCCGCTTCGGAGGATGGGCAGTGGTCTGAAGCAGTGCGTGGTAAGT
TTTTTCGCCCGTTAAAAACTCAGGCCTCGGTGCGTATTGACGCCGATGTGATGGAGTGGCTGAAACGGCCAGGAAAAGGC
TACCAGACGCGGCTCAATGCCATTCTGCGCGAGGCGATGCTGCGCGAGCAAAATAAGAAATAG
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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