Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1507210..1507481 | Replicon | chromosome |
| Accession | NZ_CP043852 | ||
| Organism | Escherichia coli ATCC 8739 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1507248..1507351 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1507210..1507481 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F1719_RS07965 | 1504367..1505806 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| F1719_RS07970 | 1505924..1506160 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| F1719_RS07975 | 1506265..1506456 | + | 192 | WP_001296140.1 | YebW family protein | - |
| F1719_RS07980 | 1506457..1507113 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1507210..1507481 | + | 272 | - | - | Antitoxin |
| - | 1507248..1507351 | - | 104 | - | - | Toxin |
| F1719_RS07985 | 1507508..1507849 | - | 342 | WP_000976472.1 | YebY family protein | - |
| F1719_RS07990 | 1507862..1508734 | - | 873 | WP_000879294.1 | copper homeostasis membrane protein CopD | - |
| F1719_RS07995 | 1508738..1509112 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| F1719_RS08000 | 1509251..1509481 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| F1719_RS08005 | 1509583..1510239 | + | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| F1719_RS08010 | 1510263..1510925 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T139384 NZ_CP043852:c1507351-1507248 [Escherichia coli ATCC 8739]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT139384 NZ_CP043852:1507210-1507481 [Escherichia coli ATCC 8739]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
