Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2053767..2053884 Replicon chromosome
Accession NZ_CP043727
Organism Yersinia canariae strain NCTC 14382

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2053791..2053883 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2053767..2053884 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
F0T03_RS09470 2049380..2050336 + 957 WP_159678030.1 prolyl aminopeptidase -
F0T03_RS09475 2050384..2050617 - 234 WP_145555379.1 DNA polymerase III subunit theta -
F0T03_RS09480 2051011..2051520 + 510 WP_145556386.1 non-heme ferritin -
F0T03_RS09485 2051911..2052297 + 387 WP_159678032.1 CopC domain-containing protein YobA -
F0T03_RS09490 2052299..2053183 + 885 WP_159678034.1 copper homeostasis membrane protein CopD -
F0T03_RS09495 2053279..2053620 + 342 WP_162526926.1 YebY family protein -
- 2053767..2053884 - 118 - - Antitoxin
- 2053791..2053883 + 93 - - Toxin
F0T03_RS09500 2053959..2054432 - 474 WP_159678037.1 tyrosine-type recombinase/integrase -
F0T03_RS09505 2054395..2054580 - 186 WP_159678040.1 hypothetical protein -
F0T03_RS09510 2055137..2057698 + 2562 WP_159678043.1 autotransporter outer membrane beta-barrel domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 93 bp

>T139178 NZ_CP043727:2053791-2053883 [Yersinia canariae]
TAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTAT
TCGGTCTCTTTTT

Antitoxin


Download         Length: 118 bp

>AT139178 NZ_CP043727:c2053884-2053767 [Yersinia canariae]
TAAAAAGAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAACGTAGGCTTACTCAGCCGTACCCTTTAAGAGTAG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References