Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3231213..3231358 | Replicon | chromosome |
| Accession | NZ_CP043597 | ||
| Organism | Klebsiella pneumoniae strain WCHKP085031 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3231220..3231322 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3231213..3231358 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B7D33_RS15870 | 3226745..3228178 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| B7D33_RS15875 | 3228294..3228533 | + | 240 | WP_002911393.1 | YebV family protein | - |
| B7D33_RS15880 | 3228631..3228822 | + | 192 | WP_002911395.1 | YebW family protein | - |
| B7D33_RS15885 | 3228819..3229472 | - | 654 | WP_004175436.1 | protein-serine/threonine phosphatase | - |
| B7D33_RS15890 | 3229629..3230597 | + | 969 | WP_074181864.1 | VirK/YbjX family protein | - |
| B7D33_RS15895 | 3230702..3230845 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3231213..3231358 | + | 146 | - | - | Antitoxin |
| - | 3231220..3231322 | - | 103 | - | - | Toxin |
| B7D33_RS15900 | 3231481..3231819 | - | 339 | WP_002911404.1 | YebY family protein | - |
| B7D33_RS15905 | 3231836..3232705 | - | 870 | WP_094644986.1 | copper homeostasis membrane protein CopD | - |
| B7D33_RS15910 | 3232709..3233083 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| B7D33_RS15915 | 3233196..3233426 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| B7D33_RS15920 | 3233505..3234164 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| B7D33_RS15925 | 3234168..3236228 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T139137 NZ_CP043597:c3231322-3231220 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT139137 NZ_CP043597:3231213-3231358 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
