Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2105439..2105710 | Replicon | chromosome |
| Accession | NZ_CP043542 | ||
| Organism | Escherichia coli strain F2_81 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2105569..2105672 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2105439..2105710 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPH39_RS10105 | 2101994..2102656 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CPH39_RS10110 | 2102680..2103336 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| CPH39_RS10115 | 2103438..2103668 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CPH39_RS10120 | 2103807..2104181 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CPH39_RS10125 | 2104185..2105057 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| CPH39_RS10130 | 2105070..2105411 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2105439..2105710 | - | 272 | - | - | Antitoxin |
| - | 2105569..2105672 | + | 104 | - | - | Toxin |
| CPH39_RS10135 | 2105807..2106463 | + | 657 | WP_089637581.1 | protein-serine/threonine phosphatase | - |
| CPH39_RS10140 | 2106464..2106655 | - | 192 | WP_001313035.1 | YebW family protein | - |
| CPH39_RS10145 | 2106760..2106996 | - | 237 | WP_096220293.1 | YebV family protein | - |
| CPH39_RS10150 | 2107114..2108553 | - | 1440 | WP_053884247.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T138976 NZ_CP043542:2105569-2105672 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT138976 NZ_CP043542:c2105710-2105439 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
