Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1928310..1928454 | Replicon | chromosome |
| Accession | NZ_CP043511 | ||
| Organism | Enterobacter kobei strain EB_P8_L5_01.19 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1928345..1928448 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1928310..1928454 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FZO55_RS09320 | 1924793..1925455 | - | 663 | WP_014884303.1 | exodeoxyribonuclease X | - |
| FZO55_RS09325 | 1925480..1926130 | - | 651 | WP_058690984.1 | carbon-nitrogen hydrolase family protein | - |
| FZO55_RS09330 | 1926241..1926471 | - | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| FZO55_RS09335 | 1926609..1926980 | + | 372 | WP_058690983.1 | CopC domain-containing protein YobA | - |
| FZO55_RS09340 | 1926982..1927851 | + | 870 | WP_023330712.1 | copper homeostasis membrane protein CopD | - |
| FZO55_RS09345 | 1927868..1928206 | + | 339 | WP_014884299.1 | YebY family protein | - |
| - | 1928310..1928454 | - | 145 | - | - | Antitoxin |
| - | 1928345..1928448 | + | 104 | - | - | Toxin |
| FZO55_RS09350 | 1928667..1929563 | - | 897 | WP_058690982.1 | benzoate transporter | - |
| FZO55_RS09355 | 1929738..1930679 | - | 942 | WP_014884298.1 | VirK/YbjX family protein | - |
| FZO55_RS09360 | 1930847..1931491 | + | 645 | WP_058690981.1 | protein-serine/threonine phosphatase | - |
| FZO55_RS09365 | 1931526..1931765 | - | 240 | WP_008500472.1 | YebV family protein | - |
| FZO55_RS09370 | 1931872..1933314 | - | 1443 | WP_045134186.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T138911 NZ_CP043511:1928345-1928448 [Enterobacter kobei]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT138911 NZ_CP043511:c1928454-1928310 [Enterobacter kobei]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
