Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2009521..2009792 | Replicon | chromosome |
| Accession | NZ_CP043487 | ||
| Organism | Escherichia coli strain AQ15 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2009559..2009662 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2009521..2009792 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FQT78_RS09715 | 2006678..2008117 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FQT78_RS09720 | 2008235..2008471 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FQT78_RS09725 | 2008576..2008767 | + | 192 | WP_001296140.1 | YebW family protein | - |
| FQT78_RS09730 | 2008768..2009424 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2009521..2009792 | + | 272 | - | - | Antitoxin |
| - | 2009559..2009662 | - | 104 | - | - | Toxin |
| FQT78_RS09735 | 2009820..2010161 | - | 342 | WP_000976472.1 | YebY family protein | - |
| FQT78_RS09740 | 2010174..2011046 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| FQT78_RS09745 | 2011050..2011424 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| FQT78_RS09750 | 2011563..2011793 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FQT78_RS09755 | 2011895..2012551 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FQT78_RS09760 | 2012575..2013237 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T138869 NZ_CP043487:c2009662-2009559 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT138869 NZ_CP043487:2009521-2009792 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
