Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2005487..2005758 | Replicon | chromosome |
| Accession | NZ_CP043486 | ||
| Organism | Escherichia coli strain SL112 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2005525..2005628 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2005487..2005758 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FQT94_RS09685 | 2002644..2004083 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FQT94_RS09690 | 2004201..2004437 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FQT94_RS09695 | 2004542..2004733 | + | 192 | WP_001296140.1 | YebW family protein | - |
| FQT94_RS09700 | 2004734..2005390 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2005487..2005758 | + | 272 | - | - | Antitoxin |
| - | 2005525..2005628 | - | 104 | - | - | Toxin |
| FQT94_RS09705 | 2005786..2006127 | - | 342 | WP_000976472.1 | YebY family protein | - |
| FQT94_RS09710 | 2006140..2007012 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| FQT94_RS09715 | 2007016..2007390 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| FQT94_RS09720 | 2007529..2007759 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FQT94_RS09725 | 2007861..2008517 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FQT94_RS09730 | 2008541..2009203 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T138839 NZ_CP043486:c2005628-2005525 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT138839 NZ_CP043486:2005487-2005758 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
