Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2670997..2671206 | Replicon | chromosome |
| Accession | NZ_CP043438 | ||
| Organism | Enterobacter sp. LU1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2671010..2671113 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2670997..2671206 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FZF21_RS12805 | 2667265..2668713 | + | 1449 | WP_202816777.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FZF21_RS12810 | 2668820..2669059 | + | 240 | WP_003859885.1 | YebV family protein | - |
| FZF21_RS12815 | 2669094..2669738 | - | 645 | WP_063945922.1 | protein-serine/threonine phosphatase | - |
| FZF21_RS12820 | 2669906..2670886 | + | 981 | WP_062938806.1 | VirK/YbjX family protein | - |
| FZF21_RS12825 | 2670932..2671129 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2670997..2671206 | + | 210 | - | - | Antitoxin |
| - | 2671010..2671113 | - | 104 | - | - | Toxin |
| FZF21_RS12830 | 2671255..2671593 | - | 339 | WP_003859787.1 | YebY family protein | - |
| FZF21_RS12835 | 2671610..2672479 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| FZF21_RS12840 | 2672481..2672852 | - | 372 | WP_023296802.1 | CopC domain-containing protein YobA | - |
| FZF21_RS12845 | 2672990..2673220 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| FZF21_RS12850 | 2673332..2673982 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| FZF21_RS12855 | 2674007..2674669 | + | 663 | WP_039270549.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T138774 NZ_CP043438:c2671113-2671010 [Enterobacter sp. LU1]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT138774 NZ_CP043438:2670997-2671206 [Enterobacter sp. LU1]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
