Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 339430..339701 | Replicon | chromosome |
| Accession | NZ_CP043406 | ||
| Organism | Escherichia coli strain NMBU-W13E19 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 339560..339663 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 339430..339701 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FZN32_RS01675 | 335985..336647 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FZN32_RS01680 | 336671..337327 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| FZN32_RS01685 | 337429..337659 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FZN32_RS01690 | 337798..338172 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| FZN32_RS01695 | 338176..339048 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| FZN32_RS01700 | 339061..339402 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 339430..339701 | - | 272 | - | - | Antitoxin |
| - | 339560..339663 | + | 104 | - | - | Toxin |
| FZN32_RS01705 | 339798..340454 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| FZN32_RS01710 | 340455..340646 | - | 192 | WP_001296140.1 | YebW family protein | - |
| FZN32_RS01715 | 340751..340987 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FZN32_RS01720 | 341105..342544 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 332120..356251 | 24131 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T138671 NZ_CP043406:339560-339663 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT138671 NZ_CP043406:c339701-339430 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
