Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2936359..2936509 | Replicon | chromosome |
| Accession | NZ_CP043398 | ||
| Organism | Leclercia adecarboxylata strain G426 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2936371..2936473 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2936359..2936509 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FY047_RS13810 | 2932363..2933805 | + | 1443 | WP_103792068.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FY047_RS13815 | 2933909..2934148 | + | 240 | WP_032611546.1 | YebV family protein | - |
| FY047_RS13820 | 2934252..2934443 | + | 192 | WP_032611549.1 | YebW family protein | - |
| FY047_RS13825 | 2934444..2935088 | - | 645 | WP_103792069.1 | protein-serine/threonine phosphatase | - |
| FY047_RS13830 | 2935267..2936214 | + | 948 | WP_103792070.1 | VirK/YbjX family protein | - |
| - | 2936359..2936509 | + | 151 | - | - | Antitoxin |
| - | 2936371..2936473 | - | 103 | - | - | Toxin |
| FY047_RS13835 | 2936615..2936953 | - | 339 | WP_032611900.1 | YebY family protein | - |
| FY047_RS13840 | 2936968..2937840 | - | 873 | WP_164529923.1 | copper homeostasis membrane protein CopD | - |
| FY047_RS13845 | 2937842..2938216 | - | 375 | WP_103792072.1 | CopC domain-containing protein YobA | - |
| FY047_RS13850 | 2938352..2938582 | + | 231 | WP_032611906.1 | DNA polymerase III subunit theta | - |
| FY047_RS13855 | 2938690..2939346 | + | 657 | WP_164529924.1 | carbon-nitrogen hydrolase family protein | - |
| FY047_RS13860 | 2939371..2940033 | + | 663 | WP_103792074.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T138649 NZ_CP043398:c2936473-2936371 [Leclercia adecarboxylata]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 151 bp
>AT138649 NZ_CP043398:2936359-2936509 [Leclercia adecarboxylata]
CTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
