Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2928869..2929019 | Replicon | chromosome |
| Accession | NZ_CP043397 | ||
| Organism | Leclercia adecarboxylata strain L21 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2928881..2928983 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2928869..2929019 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FY044_RS14025 | 2924873..2926315 | + | 1443 | WP_059307644.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FY044_RS14030 | 2926419..2926658 | + | 240 | WP_032611546.1 | YebV family protein | - |
| FY044_RS14035 | 2926762..2926953 | + | 192 | WP_032611549.1 | YebW family protein | - |
| FY044_RS14040 | 2926954..2927598 | - | 645 | WP_164540600.1 | protein-serine/threonine phosphatase | - |
| FY044_RS14045 | 2927777..2928724 | + | 948 | WP_155166975.1 | VirK/YbjX family protein | - |
| - | 2928869..2929019 | + | 151 | - | - | Antitoxin |
| - | 2928881..2928983 | - | 103 | - | - | Toxin |
| FY044_RS14050 | 2929124..2929462 | - | 339 | WP_032611900.1 | YebY family protein | - |
| FY044_RS14055 | 2929477..2930349 | - | 873 | WP_032611902.1 | copper homeostasis membrane protein CopD | - |
| FY044_RS14060 | 2930351..2930725 | - | 375 | WP_059307641.1 | CopC domain-containing protein YobA | - |
| FY044_RS14065 | 2930861..2931091 | + | 231 | WP_032611906.1 | DNA polymerase III subunit theta | - |
| FY044_RS14070 | 2931199..2931855 | + | 657 | WP_164540602.1 | carbon-nitrogen hydrolase family protein | - |
| FY044_RS14075 | 2931880..2932542 | + | 663 | WP_032611910.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T138635 NZ_CP043397:c2928983-2928881 [Leclercia adecarboxylata]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 151 bp
>AT138635 NZ_CP043397:2928869-2929019 [Leclercia adecarboxylata]
CTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
