Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) PfiT-PfiA/ParE(toxin)
Location 345707..346313 Replicon chromosome
Accession NZ_CP043396
Organism Pseudomonas monteilii strain 170620603RE

Toxin (Protein)


Gene name PfiT Uniprot ID A0A6G6UCX8
Locus tag FY043_RS01535 Protein ID WP_060501213.1
Coordinates 345707..346054 (-) Length 116 a.a.

Antitoxin (Protein)


Gene name PfiA Uniprot ID A0A923H1P8
Locus tag FY043_RS01540 Protein ID WP_025754068.1
Coordinates 346065..346313 (-) Length 83 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FY043_RS01520 341140..342507 - 1368 WP_164524045.1 HAMP domain-containing protein -
FY043_RS01525 342509..343231 - 723 WP_060501217.1 response regulator -
FY043_RS01530 343372..345669 + 2298 WP_164524046.1 TonB-dependent siderophore receptor -
FY043_RS01535 345707..346054 - 348 WP_060501213.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
FY043_RS01540 346065..346313 - 249 WP_025754068.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
FY043_RS01545 347214..348113 - 900 WP_164524047.1 hypothetical protein -
FY043_RS01550 348116..349231 - 1116 WP_164524048.1 DUF3696 domain-containing protein -
FY043_RS01555 349228..350481 - 1254 WP_206520113.1 DUF262 domain-containing protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(6-100)

Antitoxin


No domain identified.



Sequences


Toxin        


Download         Length: 116 a.a.        Molecular weight: 12751.62 Da        Isoelectric Point: 6.6372

>T138625 WP_060501213.1 NZ_CP043396:c346054-345707 [Pseudomonas monteilii]
MSKPTIRFTHSASQSIEDQVHHLAVYHGTAAALEKITTLVDTIEHRLAAAPVGYPVSPQASGLGVMQYRELNVDGYRVFY
EVIETDNAIAVGLVLRQKQSVEQALIRYCLIYPLP

Download         Length: 348 bp

>T138625 NZ_CP058175:c2411923-2411438 [Enterobacter hormaechei]
GTGGGACGTGTAACCGCCCCAGAGCCCTTATCCAGCGTCCATCAACTGGCGGAGTTCGTCAGTGGAGAGGCCGTACTTGA
CGAATGGTTAAAACAAAGAGGTCTGAAAAACCAGGCGCTTGGCGCAGCCCGAACGTTTGTCGTTTGTAAAACGGGCACAA
AGCAGGTCGCGGGATTTTACTCTCTGGCTACCGGCAGCGTTAACCATACGGAAGCGACAGGTAATTTGCGGCGTAACATG
CCGGATCCCATTCCCGTGATTATTCTTGCCCGTCTGGCTGTCGATGTCTCAATACGCGGAAATGGGTTGGGAGCCGATTT
ACTCCAGGATGCGGTTTTACGCTGTTATCGGGTAGCAGAGAATATTGGGGTGCGGGCGATCATGGTTCATGCACTCACTG
AAAAAGCCAAAGCGTTTTATATCCACCATGGTTTTAAAGCATCGCAGACTCAGGAACGGACACTGTTTCTCAGGCTTCCT
CAGTAG

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9307.61 Da        Isoelectric Point: 6.4706

>AT138625 WP_025754068.1 NZ_CP043396:c346313-346065 [Pseudomonas monteilii]
MRVETISYLKRHAADLDLEEPMVVTQNGVPAYVVESYADRKQRDEAIALVKLLAIGSREYAQGKHSSAEDLKTRLLKKFS
EE

Download         Length: 249 bp

>AT138625 NZ_CP058175:c2412177-2411911 [Enterobacter hormaechei]
ATGAAATCAGATGTTCAACTCAATCTTAGAGCCAAAGAATCCCAGCGGGCGCTTATCGATGCCGCCGCAGAGATCCTACA
TAAATCACGTACTGACTTCATTCTGGAGATGGCCTGTCAGGCAGCCGAAAATGTGATCCTCGATCGGCGTGTATTCAATT
TTAACGATGAACAGTATGCAGAGTTCATTGATATGCTTGATGCCCCGGTCGCCGACGATCCTGCCATAGAAAAACTGCTG
GCAAGGAAACCTCAGTGGGACGTGTAA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB A0A6G6UCX8


Antitoxin

Source ID Structure

References