Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4273758..4273957 | Replicon | chromosome |
| Accession | NZ_CP043382 | ||
| Organism | Enterobacter hormaechei subsp. xiangfangensis strain WCHEX045001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4273851..4273954 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4273758..4273957 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKN98_RS20850 | 4270295..4270957 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| EKN98_RS20855 | 4270982..4271632 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| EKN98_RS20860 | 4271744..4271974 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| EKN98_RS20865 | 4272112..4272483 | + | 372 | WP_023314337.1 | CopC domain-containing protein YobA | - |
| EKN98_RS20870 | 4272485..4273354 | + | 870 | WP_022651438.1 | copper homeostasis membrane protein CopD | - |
| EKN98_RS20875 | 4273371..4273709 | + | 339 | WP_032609509.1 | YebY family protein | - |
| - | 4273758..4273957 | - | 200 | - | - | Antitoxin |
| EKN98_RS20880 | 4273835..4274032 | - | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 4273851..4273954 | + | 104 | - | - | Toxin |
| EKN98_RS20885 | 4274078..4275058 | - | 981 | WP_003859879.1 | VirK/YbjX family protein | - |
| EKN98_RS20890 | 4275226..4275870 | + | 645 | WP_023324865.1 | protein-serine/threonine phosphatase | - |
| EKN98_RS20895 | 4275905..4276144 | - | 240 | WP_003859885.1 | YebV family protein | - |
| EKN98_RS20900 | 4276251..4277714 | - | 1464 | WP_032609505.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T138565 NZ_CP043382:4273851-4273954 [Enterobacter hormaechei subsp. xiangfangensis]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT138565 NZ_CP043382:c4273957-4273758 [Enterobacter hormaechei subsp. xiangfangensis]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
