Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2033440..2033585 | Replicon | chromosome |
| Accession | NZ_CP043378 | ||
| Organism | Klebsiella pneumoniae strain WCHKP095005 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2033476..2033578 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2033440..2033585 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B7D44_RS09835 | 2028570..2030630 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| B7D44_RS09840 | 2030634..2031293 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| B7D44_RS09845 | 2031372..2031602 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| B7D44_RS09850 | 2031715..2032089 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| B7D44_RS09855 | 2032093..2032962 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| B7D44_RS09860 | 2032979..2033317 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2033440..2033585 | - | 146 | - | - | Antitoxin |
| - | 2033476..2033578 | + | 103 | - | - | Toxin |
| B7D44_RS09865 | 2033954..2034097 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| B7D44_RS09870 | 2034202..2035170 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| B7D44_RS09875 | 2035327..2035980 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| B7D44_RS09880 | 2035977..2036168 | - | 192 | WP_002911395.1 | YebW family protein | - |
| B7D44_RS09885 | 2036266..2036505 | - | 240 | WP_002911393.1 | YebV family protein | - |
| B7D44_RS09890 | 2036621..2038054 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T138542 NZ_CP043378:2033476-2033578 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT138542 NZ_CP043378:c2033585-2033440 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
