Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1837771..1837916 | Replicon | chromosome |
| Accession | NZ_CP043362 | ||
| Organism | Klebsiella pneumoniae strain WCHKP085104 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1837807..1837909 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1837771..1837916 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B7D52_RS08900 | 1832901..1834961 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| B7D52_RS08905 | 1834965..1835624 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| B7D52_RS08910 | 1835703..1835933 | - | 231 | WP_048254886.1 | DNA polymerase III subunit theta | - |
| B7D52_RS08915 | 1836046..1836420 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| B7D52_RS08920 | 1836424..1837293 | + | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
| B7D52_RS08925 | 1837310..1837648 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1837771..1837916 | - | 146 | - | - | Antitoxin |
| - | 1837807..1837909 | + | 103 | - | - | Toxin |
| B7D52_RS08930 | 1838284..1838427 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| B7D52_RS08935 | 1838532..1839500 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| B7D52_RS08940 | 1839657..1840310 | + | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| B7D52_RS08945 | 1840307..1840498 | - | 192 | WP_002911395.1 | YebW family protein | - |
| B7D52_RS08950 | 1840596..1840835 | - | 240 | WP_002911393.1 | YebV family protein | - |
| B7D52_RS08955 | 1840951..1842384 | - | 1434 | WP_071081310.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T138520 NZ_CP043362:1837807-1837909 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT138520 NZ_CP043362:c1837916-1837771 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
