Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2040335..2040480 | Replicon | chromosome |
| Accession | NZ_CP043353 | ||
| Organism | Klebsiella pneumoniae strain WCHKP020115 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2040371..2040473 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2040335..2040480 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6M09_RS09975 (C6M09_09975) | 2035465..2037525 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| C6M09_RS09980 (C6M09_09980) | 2037529..2038188 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| C6M09_RS09985 (C6M09_09985) | 2038267..2038497 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| C6M09_RS09990 (C6M09_09990) | 2038610..2038984 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| C6M09_RS09995 (C6M09_09995) | 2038988..2039857 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| C6M09_RS10000 (C6M09_10000) | 2039874..2040212 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2040335..2040480 | - | 146 | - | - | Antitoxin |
| - | 2040371..2040473 | + | 103 | - | - | Toxin |
| C6M09_RS10005 (C6M09_10005) | 2040848..2040991 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| C6M09_RS10010 (C6M09_10010) | 2041096..2042064 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| C6M09_RS10015 (C6M09_10015) | 2042221..2042874 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| C6M09_RS10020 (C6M09_10020) | 2042871..2043062 | - | 192 | WP_002911395.1 | YebW family protein | - |
| C6M09_RS10025 (C6M09_10025) | 2043160..2043399 | - | 240 | WP_002911393.1 | YebV family protein | - |
| C6M09_RS10030 (C6M09_10030) | 2043515..2044948 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T138468 NZ_CP043353:2040371-2040473 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT138468 NZ_CP043353:c2040480-2040335 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
