Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2018128..2018273 | Replicon | chromosome |
| Accession | NZ_CP043344 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain WCHKP020039 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2018164..2018266 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2018128..2018273 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CVC44_RS09880 (CVC44_10030) | 2013258..2015318 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| CVC44_RS09885 (CVC44_10035) | 2015322..2015981 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| CVC44_RS09890 (CVC44_10040) | 2016060..2016290 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CVC44_RS09895 (CVC44_10045) | 2016403..2016777 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CVC44_RS09900 (CVC44_10050) | 2016781..2017650 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| CVC44_RS09905 (CVC44_10055) | 2017667..2018005 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2018128..2018273 | - | 146 | - | - | Antitoxin |
| - | 2018164..2018266 | + | 103 | - | - | Toxin |
| CVC44_RS09910 (CVC44_10065) | 2018641..2018784 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| CVC44_RS09915 (CVC44_10070) | 2018889..2019857 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CVC44_RS09920 (CVC44_10075) | 2020014..2020667 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| CVC44_RS09925 (CVC44_10080) | 2020664..2020855 | - | 192 | WP_002911395.1 | YebW family protein | - |
| CVC44_RS09930 (CVC44_10085) | 2020953..2021192 | - | 240 | WP_002911393.1 | YebV family protein | - |
| CVC44_RS09935 (CVC44_10090) | 2021308..2022741 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T138425 NZ_CP043344:2018164-2018266 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT138425 NZ_CP043344:c2018273-2018128 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
