Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 797157..797992 | Replicon | chromosome |
| Accession | NZ_CP043284 | ||
| Organism | Escherichia coli strain WCHEC025985 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | A0A7A2ZCB4 |
| Locus tag | FYK42_RS03885 | Protein ID | WP_061157978.1 |
| Coordinates | 797157..797534 (-) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | B7MK11 |
| Locus tag | FYK42_RS03890 | Protein ID | WP_001285610.1 |
| Coordinates | 797624..797992 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYK42_RS03850 (792634) | 792634..792837 | + | 204 | Protein_756 | type II secretion system protein GspJ | - |
| FYK42_RS03855 (792840) | 792840..793817 | + | 978 | WP_000633220.1 | type II secretion system minor pseudopilin GspK | - |
| FYK42_RS03860 (793814) | 793814..794992 | + | 1179 | WP_000094970.1 | type II secretion system protein GspL | - |
| FYK42_RS03865 (794994) | 794994..795530 | + | 537 | WP_000942786.1 | GspM family type II secretion system protein YghD | - |
| FYK42_RS03870 (795811) | 795811..796653 | - | 843 | WP_001280493.1 | DUF4942 domain-containing protein | - |
| FYK42_RS03875 (796738) | 796738..796935 | - | 198 | WP_085949090.1 | DUF957 domain-containing protein | - |
| FYK42_RS03880 (796963) | 796963..797160 | - | 198 | Protein_762 | DUF5983 family protein | - |
| FYK42_RS03885 (797157) | 797157..797534 | - | 378 | WP_061157978.1 | type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA | Toxin |
| FYK42_RS03890 (797624) | 797624..797992 | - | 369 | WP_001285610.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| FYK42_RS03895 (798072) | 798072..798293 | - | 222 | WP_000692350.1 | DUF987 domain-containing protein | - |
| FYK42_RS03900 (798380) | 798380..798856 | - | 477 | WP_123005181.1 | RadC family protein | - |
| FYK42_RS03905 (798872) | 798872..799042 | - | 171 | Protein_767 | antirestriction protein | - |
| FYK42_RS03910 (799044) | 799044..800864 | - | 1821 | Protein_768 | AIDA repeat-containing protein | - |
| FYK42_RS03915 (801236) | 801236..802108 | - | 873 | WP_021527212.1 | GTPase family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 13911.90 Da Isoelectric Point: 7.9085
>T138232 WP_061157978.1 NZ_CP043284:c797534-797157 [Escherichia coli]
MKTLPVLPGQAASSHPSPVEIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPGAKQ
MKTLPVLPGQAASSHPSPVEIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPGAKQ
Download Length: 378 bp
>T138232 NZ_CP043284:c797534-797157 [Escherichia coli]
ATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCACACCCGTCTCCGGTTGAAATCTGGCAGACACTGCTCAC
CCGACTGCTGGATCAGCACTACGGCCTTACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGCGATGCGGTGAACTTTCTCGTTGAAAAATACGCACTGGTACGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGTTCTCAGTTAATAAACAGTATTGATATCCTCCGGGCACGCCGGGCAACCGGCCTGATGACACGCGA
CAACTACAGAACGGTAAATAACATTACCCTGGGTAAACATCCGGGGGCGAAACAATGA
ATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCACACCCGTCTCCGGTTGAAATCTGGCAGACACTGCTCAC
CCGACTGCTGGATCAGCACTACGGCCTTACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGCGATGCGGTGAACTTTCTCGTTGAAAAATACGCACTGGTACGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGTTCTCAGTTAATAAACAGTATTGATATCCTCCGGGCACGCCGGGCAACCGGCCTGATGACACGCGA
CAACTACAGAACGGTAAATAACATTACCCTGGGTAAACATCCGGGGGCGAAACAATGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13606.39 Da Isoelectric Point: 6.0618
>AT138232 WP_001285610.1 NZ_CP043284:c797992-797624 [Escherichia coli]
VSDTLPGTTLPDDNNDRTWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADSYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYMAVYPTPETKK
VSDTLPGTTLPDDNNDRTWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADSYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYMAVYPTPETKK
Download Length: 369 bp
>AT138232 NZ_CP043284:c797992-797624 [Escherichia coli]
GTGTCAGACACACTCCCCGGGACAACGCTTCCCGACGACAATAACGACCGCACCTGGTGGGGACTGCCCTGCACCGTGAC
GCCCTGTTTTGGTGCCCGTCTGGTACAGGAAGGCAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGGCGGT
TCAGCGACGCGGATTCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCGAAGCCGACACCCTCGGCAGTTG
TGGCTACGTTTATATGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA
GTGTCAGACACACTCCCCGGGACAACGCTTCCCGACGACAATAACGACCGCACCTGGTGGGGACTGCCCTGCACCGTGAC
GCCCTGTTTTGGTGCCCGTCTGGTACAGGAAGGCAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGGCGGT
TCAGCGACGCGGATTCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCGAAGCCGACACCCTCGGCAGTTG
TGGCTACGTTTATATGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|