Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 795993..796825 | Replicon | chromosome |
| Accession | NZ_CP043279 | ||
| Organism | Escherichia coli strain WCHEC025157 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | A7ZVJ9 |
| Locus tag | FYK41_RS03865 | Protein ID | WP_000854765.1 |
| Coordinates | 795993..796367 (-) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | S1NM52 |
| Locus tag | FYK41_RS03870 | Protein ID | WP_001295723.1 |
| Coordinates | 796457..796825 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYK41_RS03830 (791071) | 791071..791670 | + | 600 | WP_001255034.1 | type II secretion system minor pseudopilin GspJ | - |
| FYK41_RS03835 (791673) | 791673..792650 | + | 978 | WP_000633209.1 | type II secretion system minor pseudopilin GspK | - |
| FYK41_RS03840 (792647) | 792647..793825 | + | 1179 | WP_000094991.1 | type II secretion system protein GspL | - |
| FYK41_RS03845 (793827) | 793827..794363 | + | 537 | WP_000942785.1 | GspM family type II secretion system protein YghD | - |
| FYK41_RS03850 (794644) | 794644..795486 | - | 843 | WP_022645115.1 | DUF4942 domain-containing protein | - |
| FYK41_RS03855 (795571) | 795571..795765 | - | 195 | WP_024181941.1 | DUF957 domain-containing protein | - |
| FYK41_RS03860 (795790) | 795790..795993 | - | 204 | WP_001398797.1 | DUF5983 family protein | - |
| FYK41_RS03865 (795993) | 795993..796367 | - | 375 | WP_000854765.1 | TA system toxin CbtA family protein | Toxin |
| FYK41_RS03870 (796457) | 796457..796825 | - | 369 | WP_001295723.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| FYK41_RS03875 (796988) | 796988..797209 | - | 222 | WP_000692341.1 | DUF987 domain-containing protein | - |
| FYK41_RS03880 (797272) | 797272..797748 | - | 477 | WP_001186774.1 | RadC family protein | - |
| FYK41_RS03885 (797764) | 797764..798243 | - | 480 | WP_057109541.1 | antirestriction protein | - |
| FYK41_RS03890 (798509) | 798509..799327 | - | 819 | WP_001175165.1 | DUF932 domain-containing protein | - |
| FYK41_RS03895 (799417) | 799417..799650 | - | 234 | WP_001278293.1 | DUF905 family protein | - |
| FYK41_RS03900 (799656) | 799656..800333 | - | 678 | WP_001097302.1 | hypothetical protein | - |
| FYK41_RS03905 (800481) | 800481..801161 | - | 681 | WP_001282921.1 | WYL domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 13970.98 Da Isoelectric Point: 7.2909
>T138199 WP_000854765.1 NZ_CP043279:c796367-795993 [Escherichia coli]
MKTLPDTHVREVSCCPSPVTIWQTLLTRLLDQHYSLTLNDTPFVDERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SAGASSQLINSIDILRARRATGLMTRHNYRTVNNITLGKYPEAK
MKTLPDTHVREVSCCPSPVTIWQTLLTRLLDQHYSLTLNDTPFVDERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SAGASSQLINSIDILRARRATGLMTRHNYRTVNNITLGKYPEAK
Download Length: 375 bp
>T138199 NZ_CP057458:c3438847-3438440 [Escherichia fergusonii]
GTGGTCCTGTGGCAATCTGATTTACGCGTCTCCTGGCGCGCGCAGTGGCTTTCCTTGCTGATTCATGGGCTGGTTGCCGC
TGTTATTTTACTCATGCCCTGGCCGTTAAGTTACACCCCGTTATGGATGGTGCTACTTTCGCTGGTGGTGTTTGATTGCG
TTCGCAGCCAGCGACGCATTAATGCTCGCCAGGGGGAAATTCGCCTGTTGATGGACGGGCGTTTGCGTTGGCAAGGGCAG
GAGTGGAGCATCGTCAAAGCGCCGTGGATGATTAAAAGCGGCATGATGTTGCGTTTACGTTCTGATAGCGGTAAACGTCA
GCACTTGTGGCTGGCAGCCGACAGCATGGACGAAGCCGAATGGCGGGATTTACGGCGGATTTTGTTGCAACAAGAGACGC
AAAGATAA
GTGGTCCTGTGGCAATCTGATTTACGCGTCTCCTGGCGCGCGCAGTGGCTTTCCTTGCTGATTCATGGGCTGGTTGCCGC
TGTTATTTTACTCATGCCCTGGCCGTTAAGTTACACCCCGTTATGGATGGTGCTACTTTCGCTGGTGGTGTTTGATTGCG
TTCGCAGCCAGCGACGCATTAATGCTCGCCAGGGGGAAATTCGCCTGTTGATGGACGGGCGTTTGCGTTGGCAAGGGCAG
GAGTGGAGCATCGTCAAAGCGCCGTGGATGATTAAAAGCGGCATGATGTTGCGTTTACGTTCTGATAGCGGTAAACGTCA
GCACTTGTGGCTGGCAGCCGACAGCATGGACGAAGCCGAATGGCGGGATTTACGGCGGATTTTGTTGCAACAAGAGACGC
AAAGATAA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13592.40 Da Isoelectric Point: 6.6255
>AT138199 WP_001295723.1 NZ_CP043279:c796825-796457 [Escherichia coli]
VSDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFRDADAYPLDQAFPLLMKQLKLMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK
VSDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFRDADAYPLDQAFPLLMKQLKLMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK
Download Length: 369 bp
>AT138199 NZ_CP057458:c3439094-3438828 [Escherichia fergusonii]
ATGGACATTAATAACAAAGCCCGCATTCACTGGGCATGCCGCCGTGGTATGCGCGAACTCGATATTTCAATCATGCCGTT
TTTCGAACATGAGTACGACAGCTTAAGTGATGACGAAAAACGCATCTTTATTCGTCTGCTGGAATGTGACGATCCCGATC
TGTTCAACTGGCTGATGAATCATGGTAAACCGGCCGATGCAGAACTGGAAATGATGGTCCGACTCATCCAGACACGGAAT
CGGGAACGTGGTCCTGTGGCAATCTGA
ATGGACATTAATAACAAAGCCCGCATTCACTGGGCATGCCGCCGTGGTATGCGCGAACTCGATATTTCAATCATGCCGTT
TTTCGAACATGAGTACGACAGCTTAAGTGATGACGAAAAACGCATCTTTATTCGTCTGCTGGAATGTGACGATCCCGATC
TGTTCAACTGGCTGATGAATCATGGTAAACCGGCCGATGCAGAACTGGAAATGATGGTCCGACTCATCCAGACACGGAAT
CGGGAACGTGGTCCTGTGGCAATCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|