Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vagCD/VapC-VagC
Location 99805..100448 Replicon plasmid p1_035148
Accession NZ_CP043276
Organism Escherichia coli strain WCHEC035148

Toxin (Protein)


Gene name vagD Uniprot ID V0UN72
Locus tag FYK53_RS23590 Protein ID WP_001034044.1
Coordinates 100032..100448 (+) Length 139 a.a.

Antitoxin (Protein)


Gene name vagC Uniprot ID B1P7N7
Locus tag FYK53_RS23585 Protein ID WP_001261286.1
Coordinates 99805..100035 (+) Length 77 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FYK53_RS23565 (96436) 96436..97191 - 756 WP_000852146.1 replication initiation protein RepE -
FYK53_RS23570 (97913) 97913..98719 - 807 WP_000016970.1 site-specific integrase -
FYK53_RS23575 (98720) 98720..99025 - 306 WP_001159871.1 type II toxin-antitoxin system toxin CcdB -
FYK53_RS23580 (99027) 99027..99245 - 219 WP_000813630.1 type II toxin-antitoxin system antitoxin CcdA -
FYK53_RS23585 (99805) 99805..100035 + 231 WP_001261286.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
FYK53_RS23590 (100032) 100032..100448 + 417 WP_001034044.1 type II toxin-antitoxin system VapC family toxin Toxin
FYK53_RS23595 (100523) 100523..102088 + 1566 WP_001128474.1 AAA family ATPase -
FYK53_RS23600 (102073) 102073..103095 + 1023 WP_000361402.1 helicase UvrD -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid dfrA14 / qnrS1 / tet(A) / sitABCD iutA / iucD / iucC / iucB / iucA 1..122305 122305
- flank IS/Tn - - 103349..103726 377


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(5-129)

Antitoxin

SpoVT-AbrB domain

(7-52)


Sequences

Toxin        


Download         Length: 139 a.a.        Molecular weight: 15232.66 Da        Isoelectric Point: 6.8536

>T138193 WP_001034044.1 NZ_CP043276:100032-100448 [Escherichia coli]
VNKIYMLDTNICSFIMREQPEALLKHLEQSVLRGHRIVVSAITYSEMRFGATGPKASPRHVQLVDAFCERLDAVLPWDRA
AVDATTEIKVALRLAGTPIGPNDTAIAGHAIAACAILVTNNVREFERVPGLVLEDWVR

Download         Length: 417 bp

>T138193 NZ_CP057458:1802880-1802983 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 77 a.a.        Molecular weight: 8747.86 Da        Isoelectric Point: 4.3775

>AT138193 WP_001261286.1 NZ_CP043276:99805-100035 [Escherichia coli]
MRTVSIFKNGNNRAIRLPRDLDFEGVSELEIVREGDSIILRPVRPTWGSFLELEKADPDFMTEREDVVSDEGRVNL

Download         Length: 231 bp

>AT138193 NZ_CP057458:c1803021-1802754 [Escherichia fergusonii]
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829CHW1

Antitoxin

Source ID Structure
AlphaFold DB A0A829CKZ6

References