Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1861914..1862146 | Replicon | chromosome |
| Accession | NZ_CP043271 | ||
| Organism | Escherichia albertii strain RM9973 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1861916..1862018 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1861914..1862146 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYK17_RS08900 | 1858317..1859774 | - | 1458 | WP_207610710.1 | TrkH family potassium uptake protein | - |
| FYK17_RS08905 | 1859847..1860167 | - | 321 | WP_054411012.1 | hypothetical protein | - |
| - | 1861914..1862146 | + | 233 | - | - | Antitoxin |
| - | 1861916..1862018 | - | 103 | - | - | Toxin |
| FYK17_RS08910 | 1862176..1862517 | - | 342 | WP_000976487.1 | YebY family protein | - |
| FYK17_RS08915 | 1862530..1863402 | - | 873 | WP_059244199.1 | copper homeostasis membrane protein CopD | - |
| FYK17_RS08920 | 1863406..1863783 | - | 378 | WP_000741564.1 | CopC domain-containing protein YobA | - |
| FYK17_RS08925 | 1863922..1864152 | + | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| FYK17_RS08930 | 1864318..1864530 | + | 213 | Protein_1748 | carbon-nitrogen hydrolase family protein | - |
| FYK17_RS08935 | 1864554..1865216 | + | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | espJ | 1837039..1868297 | 31258 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T138137 NZ_CP043271:c1862018-1861916 [Escherichia albertii]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT138137 NZ_CP043271:1861914-1862146 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
