Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1873906..1874138 | Replicon | chromosome |
| Accession | NZ_CP043266 | ||
| Organism | Escherichia albertii strain RM9974 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1873908..1874010 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1873906..1874138 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYK18_RS09540 | 1870311..1871768 | - | 1458 | WP_059220010.1 | Trk system potassium transporter TrkG | - |
| FYK18_RS09545 | 1871841..1872161 | - | 321 | WP_000086028.1 | hypothetical protein | - |
| - | 1873906..1874138 | + | 233 | - | - | Antitoxin |
| - | 1873908..1874010 | - | 103 | - | - | Toxin |
| FYK18_RS09550 | 1874168..1874509 | - | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| FYK18_RS09555 | 1874522..1875394 | - | 873 | WP_059220009.1 | copper homeostasis membrane protein CopD | - |
| FYK18_RS09560 | 1875398..1875775 | - | 378 | WP_059278247.1 | CopC domain-containing protein YobA | - |
| FYK18_RS09565 | 1875914..1876144 | + | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| FYK18_RS09570 | 1876309..1876521 | + | 213 | Protein_1875 | carbon-nitrogen hydrolase family protein | - |
| FYK18_RS09575 | 1876545..1877207 | + | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | espJ | 1865596..1874509 | 8913 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T138106 NZ_CP043266:c1874010-1873908 [Escherichia albertii]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT138106 NZ_CP043266:1873906-1874138 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
