Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2018302..2018534 | Replicon | chromosome |
| Accession | NZ_CP043262 | ||
| Organism | Escherichia albertii strain RM9976 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2018430..2018532 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2018302..2018534 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYK19_RS09775 | 2015233..2015895 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| FYK19_RS09780 | 2015919..2016131 | - | 213 | Protein_1906 | carbon-nitrogen hydrolase family protein | - |
| FYK19_RS09785 | 2016296..2016526 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| FYK19_RS09790 | 2016665..2017042 | + | 378 | WP_262939619.1 | CopC domain-containing protein YobA | - |
| FYK19_RS09795 | 2017046..2017918 | + | 873 | WP_059223932.1 | copper homeostasis membrane protein CopD | - |
| FYK19_RS09800 | 2017931..2018272 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 2018302..2018534 | - | 233 | - | - | Antitoxin |
| - | 2018430..2018532 | + | 103 | - | - | Toxin |
| FYK19_RS09805 | 2020276..2020596 | + | 321 | WP_054411012.1 | hypothetical protein | - |
| FYK19_RS09810 | 2020669..2022126 | + | 1458 | WP_024165002.1 | Trk system potassium transporter TrkG | - |
| FYK19_RS09815 | 2022446..2023237 | - | 792 | WP_233991624.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T138067 NZ_CP043262:2018430-2018532 [Escherichia albertii]
GCAAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT138067 NZ_CP043262:c2018534-2018302 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTCAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTCAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
