Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | ataRT/DUF1778(antitoxin) |
| Location | 3843805..3844605 | Replicon | chromosome |
| Accession | NZ_CP043258 | ||
| Organism | Escherichia albertii strain RM10507 | ||
Toxin (Protein)
| Gene name | ataT | Uniprot ID | - |
| Locus tag | FYK20_RS19105 | Protein ID | WP_059277150.1 |
| Coordinates | 3843805..3844332 (-) | Length | 176 a.a. |
Antitoxin (Protein)
| Gene name | ataR | Uniprot ID | B1EHP0 |
| Locus tag | FYK20_RS19110 | Protein ID | WP_001277106.1 |
| Coordinates | 3844339..3844605 (-) | Length | 89 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYK20_RS19080 (3838880) | 3838880..3839647 | - | 768 | WP_000082094.1 | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG | - |
| FYK20_RS19085 (3839644) | 3839644..3840921 | - | 1278 | WP_059228517.1 | branched chain amino acid ABC transporter permease LivM | - |
| FYK20_RS19090 (3840918) | 3840918..3841844 | - | 927 | WP_001295097.1 | high-affinity branched-chain amino acid ABC transporter permease LivH | - |
| FYK20_RS19095 (3841892) | 3841892..3843001 | - | 1110 | WP_000827693.1 | high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK | - |
| FYK20_RS19100 (3843425) | 3843425..3843808 | + | 384 | WP_000778774.1 | aspartate 1-decarboxylase autocleavage activator PanM | - |
| FYK20_RS19105 (3843805) | 3843805..3844332 | - | 528 | WP_059277150.1 | type II toxin-antitoxin system toxin acetyltransferase AtaT | Toxin |
| FYK20_RS19110 (3844339) | 3844339..3844605 | - | 267 | WP_001277106.1 | type II toxin-antitoxin system antitoxin AtaR | Antitoxin |
| FYK20_RS19115 (3844755) | 3844755..3845858 | - | 1104 | WP_265463920.1 | branched chain amino acid ABC transporter substrate-binding protein LivJ | - |
| FYK20_RS19120 (3846381) | 3846381..3846782 | + | 402 | WP_001071334.1 | PTS sugar transporter subunit IIA | - |
| FYK20_RS19125 (3846789) | 3846789..3847274 | + | 486 | WP_000029259.1 | PTS sugar transporter subunit IIB | - |
| FYK20_RS19130 (3847291) | 3847291..3848037 | + | 747 | WP_000151888.1 | PTS sugar transporter subunit IIC | - |
| FYK20_RS19135 (3848030) | 3848030..3848884 | + | 855 | WP_000370584.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 176 a.a. Molecular weight: 19592.50 Da Isoelectric Point: 6.6343
>T138053 WP_059277150.1 NZ_CP043258:c3844332-3843805 [Escherichia albertii]
MDDLTIEILTDDADYDLQRFDCGEEALNLFLTTHLVRQHRNKILRAYILCSNTPERQVLGYYTLSGSCFERAALPSKSKQ
KKIPYKNIPSVTLGRLAIDRSLQGQGWGATLVAHAMKVVWSASLAVGIHGLFVEALNEKAHTFYQSLGFIPLVGENENAL
FFPTKSIELLFTLSD
MDDLTIEILTDDADYDLQRFDCGEEALNLFLTTHLVRQHRNKILRAYILCSNTPERQVLGYYTLSGSCFERAALPSKSKQ
KKIPYKNIPSVTLGRLAIDRSLQGQGWGATLVAHAMKVVWSASLAVGIHGLFVEALNEKAHTFYQSLGFIPLVGENENAL
FFPTKSIELLFTLSD
Download Length: 528 bp
>T138053 NZ_CP043258:c3844332-3843805 [Escherichia albertii]
ATGGATGATCTGACGATAGAGATTCTGACCGATGATGCAGATTATGATCTACAGCGATTCGACTGCGGCGAGGAAGCGTT
AAATCTCTTTCTGACGACACATCTGGTTCGTCAACATCGCAATAAAATTTTGCGAGCGTATATCCTTTGTAGCAACACTC
CAGAACGTCAGGTCCTGGGATATTACACATTATCCGGCAGTTGTTTTGAACGAGCCGCACTGCCCTCGAAATCGAAACAG
AAAAAAATTCCCTACAAAAATATTCCCAGCGTCACTCTTGGGCGTCTGGCAATTGATCGTTCATTACAGGGGCAGGGATG
GGGAGCAACACTGGTTGCTCATGCCATGAAAGTCGTCTGGTCAGCCTCATTAGCGGTAGGTATTCACGGTCTTTTTGTCG
AGGCTCTGAATGAAAAAGCCCATACGTTTTATCAGTCGCTGGGCTTTATCCCGTTGGTTGGAGAAAACGAAAATGCGTTA
TTTTTCCCAACCAAATCCATTGAACTGCTTTTTACACTGAGCGATTAA
ATGGATGATCTGACGATAGAGATTCTGACCGATGATGCAGATTATGATCTACAGCGATTCGACTGCGGCGAGGAAGCGTT
AAATCTCTTTCTGACGACACATCTGGTTCGTCAACATCGCAATAAAATTTTGCGAGCGTATATCCTTTGTAGCAACACTC
CAGAACGTCAGGTCCTGGGATATTACACATTATCCGGCAGTTGTTTTGAACGAGCCGCACTGCCCTCGAAATCGAAACAG
AAAAAAATTCCCTACAAAAATATTCCCAGCGTCACTCTTGGGCGTCTGGCAATTGATCGTTCATTACAGGGGCAGGGATG
GGGAGCAACACTGGTTGCTCATGCCATGAAAGTCGTCTGGTCAGCCTCATTAGCGGTAGGTATTCACGGTCTTTTTGTCG
AGGCTCTGAATGAAAAAGCCCATACGTTTTATCAGTCGCTGGGCTTTATCCCGTTGGTTGGAGAAAACGAAAATGCGTTA
TTTTTCCCAACCAAATCCATTGAACTGCTTTTTACACTGAGCGATTAA
Antitoxin
Download Length: 89 a.a. Molecular weight: 9942.37 Da Isoelectric Point: 10.0863
>AT138053 WP_001277106.1 NZ_CP043258:c3844605-3844339 [Escherichia albertii]
MSAVKKQRIDLRLTDDDKSMIEEAAAISNQSVSQFMLNSASQRAAEVIEQHRRMILNEESWTRVMDALSNPPSPGEKLKR
AAKRLQGM
MSAVKKQRIDLRLTDDDKSMIEEAAAISNQSVSQFMLNSASQRAAEVIEQHRRMILNEESWTRVMDALSNPPSPGEKLKR
AAKRLQGM
Download Length: 267 bp
>AT138053 NZ_CP057239:c116045-115829 [Escherichia fergusonii]
TCACACGGATTTCCCGAGAACGGTCTGAATGAGCGGATTCTTTTCAGGAAAAGTGAGTGTGGTCAGCGCGCAGGGATATG
GGCTATGATGTGCCCGGCGCTTGAGGCTTTCTGCCTCATGACGTGAAGGTGGTTTGTTATCCTGTCGTGTGGCAGAAAGA
CAAAAGCCCCGTAGTTAATTTTCATTAACCCACGAGGCCTCTGCATGTCTAGTCCAC
TCACACGGATTTCCCGAGAACGGTCTGAATGAGCGGATTCTTTTCAGGAAAAGTGAGTGTGGTCAGCGCGCAGGGATATG
GGCTATGATGTGCCCGGCGCTTGAGGCTTTCTGCCTCATGACGTGAAGGTGGTTTGTTATCCTGTCGTGTGGCAGAAAGA
CAAAAGCCCCGTAGTTAATTTTCATTAACCCACGAGGCCTCTGCATGTCTAGTCCAC
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|