Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1978100..1978332 | Replicon | chromosome |
| Accession | NZ_CP043258 | ||
| Organism | Escherichia albertii strain RM10507 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1978102..1978204 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1978100..1978332 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYK20_RS09815 | 1974509..1975966 | - | 1458 | WP_149449849.1 | Trk system potassium transporter TrkG | - |
| FYK20_RS09820 | 1976039..1976359 | - | 321 | WP_054411012.1 | hypothetical protein | - |
| - | 1978100..1978332 | + | 233 | - | - | Antitoxin |
| - | 1978102..1978204 | - | 103 | - | - | Toxin |
| FYK20_RS09825 | 1978362..1978703 | - | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| FYK20_RS09830 | 1978716..1979588 | - | 873 | WP_059244199.1 | copper homeostasis membrane protein CopD | - |
| FYK20_RS09835 | 1979592..1979969 | - | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| FYK20_RS09840 | 1980108..1980338 | + | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| FYK20_RS09845 | 1980503..1980715 | + | 213 | Protein_1926 | carbon-nitrogen hydrolase family protein | - |
| FYK20_RS09850 | 1980739..1981401 | + | 663 | WP_265464465.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | espJ | 1969782..1978703 | 8921 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T138043 NZ_CP043258:c1978204-1978102 [Escherichia albertii]
GCAAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT138043 NZ_CP043258:1978100-1978332 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTCAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTCAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
