Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 810215..810486 | Replicon | chromosome |
| Accession | NZ_CP043227 | ||
| Organism | Escherichia coli strain Ec-050 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 810253..810356 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 810215..810486 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FX998_RS04010 | 807372..808811 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FX998_RS04015 | 808929..809165 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FX998_RS04020 | 809270..809461 | + | 192 | WP_000457842.1 | YebW family protein | - |
| FX998_RS04025 | 809462..810118 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 810215..810486 | + | 272 | - | - | Antitoxin |
| - | 810253..810356 | - | 104 | - | - | Toxin |
| FX998_RS04030 | 810514..810855 | - | 342 | WP_000976476.1 | YebY family protein | - |
| FX998_RS04035 | 810868..811740 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| FX998_RS04040 | 811744..812118 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FX998_RS04045 | 812257..812487 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FX998_RS04050 | 812589..813245 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FX998_RS04055 | 813269..813931 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T137996 NZ_CP043227:c810356-810253 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT137996 NZ_CP043227:810215-810486 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
