Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2689648..2689857 | Replicon | chromosome |
| Accession | NZ_CP043225 | ||
| Organism | Enterobacter hormaechei strain PG20180056 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2689661..2689764 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2689648..2689857 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYA23_RS12815 | 2685901..2687364 | + | 1464 | WP_017693253.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FYA23_RS12820 | 2687471..2687710 | + | 240 | WP_003859885.1 | YebV family protein | - |
| FYA23_RS12825 | 2687745..2688389 | - | 645 | WP_015570293.1 | protein-serine/threonine phosphatase | - |
| FYA23_RS12830 | 2688557..2689537 | + | 981 | WP_047719460.1 | VirK/YbjX family protein | - |
| FYA23_RS12835 | 2689583..2689780 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2689648..2689857 | + | 210 | - | - | Antitoxin |
| - | 2689661..2689764 | - | 104 | - | - | Toxin |
| FYA23_RS12840 | 2689906..2690244 | - | 339 | WP_003859787.1 | YebY family protein | - |
| FYA23_RS12845 | 2690261..2691130 | - | 870 | WP_047719459.1 | copper homeostasis membrane protein CopD | - |
| FYA23_RS12850 | 2691132..2691503 | - | 372 | WP_023296802.1 | CopC domain-containing protein YobA | - |
| FYA23_RS12855 | 2691641..2691871 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| FYA23_RS12860 | 2691983..2692633 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| FYA23_RS12865 | 2692658..2693320 | + | 663 | WP_047733794.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T137970 NZ_CP043225:c2689764-2689661 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT137970 NZ_CP043225:2689648-2689857 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
