Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 793657..793928 | Replicon | chromosome |
| Accession | NZ_CP043217 | ||
| Organism | Escherichia coli O80:H26 strain EC-107 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 793695..793798 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 793657..793928 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYA02_RS04095 | 790814..792253 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FYA02_RS04100 | 792371..792607 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FYA02_RS04105 | 792712..792903 | + | 192 | WP_001296140.1 | YebW family protein | - |
| FYA02_RS04110 | 792904..793560 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 793657..793928 | + | 272 | - | - | Antitoxin |
| - | 793695..793798 | - | 104 | - | - | Toxin |
| FYA02_RS04115 | 793955..794296 | - | 342 | WP_000976472.1 | YebY family protein | - |
| FYA02_RS04120 | 794309..795181 | - | 873 | WP_069722788.1 | copper homeostasis membrane protein CopD | - |
| FYA02_RS04125 | 795185..795559 | - | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| FYA02_RS04130 | 795698..795928 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FYA02_RS04135 | 796030..796686 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FYA02_RS04140 | 796710..797372 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T137939 NZ_CP043217:c793798-793695 [Escherichia coli O80:H26]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT137939 NZ_CP043217:793657-793928 [Escherichia coli O80:H26]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
