Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) hicAB/UPF0150(antitoxin)
Location 2661061..2661699 Replicon chromosome
Accession NZ_CP043211
Organism Escherichia coli O16:H48 strain PG20180050

Toxin (Protein)


Gene name hicA Uniprot ID S1F9G9
Locus tag FYA05_RS12855 Protein ID WP_000813794.1
Coordinates 2661523..2661699 (-) Length 59 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID -
Locus tag FYA05_RS12850 Protein ID WP_001270286.1
Coordinates 2661061..2661477 (-) Length 139 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FYA05_RS12830 2656213..2657154 - 942 WP_001251304.1 ABC transporter permease -
FYA05_RS12835 2657155..2658168 - 1014 WP_000220396.1 ABC transporter ATP-binding protein -
FYA05_RS12840 2658186..2659331 - 1146 WP_000047424.1 ABC transporter substrate-binding protein -
FYA05_RS12845 2659576..2660982 - 1407 WP_000760626.1 PLP-dependent aminotransferase family protein -
FYA05_RS12850 2661061..2661477 - 417 WP_001270286.1 type II toxin-antitoxin system antitoxin HicB Antitoxin
FYA05_RS12855 2661523..2661699 - 177 WP_000813794.1 type II toxin-antitoxin system mRNA interferase toxin HicA Toxin
FYA05_RS12860 2661921..2662151 + 231 WP_000494244.1 YncJ family protein -
FYA05_RS12865 2662243..2664204 - 1962 WP_001303492.1 23S rRNA 5-hydroxycytidine C2501 synthase -
FYA05_RS12870 2664277..2664813 - 537 WP_000429155.1 DNA-binding transcriptional regulator SutR -
FYA05_RS12875 2664866..2666080 + 1215 WP_001326689.1 BenE family transporter YdcO -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(5-57)

Antitoxin

(91-134)


Sequences


Toxin        


Download         Length: 59 a.a.        Molecular weight: 6749.83 Da        Isoelectric Point: 11.2298

>T137878 WP_000813794.1 NZ_CP043211:c2661699-2661523 [Escherichia coli O16:H48]
VKQSEFRRWLESQGVDVANGSNHLKLRFHGRRSVMPRHPCDEIKEPLRKAILKQLGLS

Download         Length: 177 bp

>T137878 NZ_CP043211:c2661699-2661523 [Escherichia coli O16:H48]
GTGAAACAAAGCGAGTTCAGACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAG
GTTTCATGGGAGGCGCAGTGTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAAC
AACTCGGTTTGAGTTAA

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 15246.63 Da        Isoelectric Point: 4.7386

>AT137878 WP_001270286.1 NZ_CP043211:c2661477-2661061 [Escherichia coli O16:H48]
MRYPVTLTPAPEGGYMVSFVDIPEALTQGETVAEAMEAAKDALLTAFDFYFEDNELIPLPSPLNSHDHFIEVPLSVASKV
LLLNAFLQSEITQQELARRIGKPKQEITRLFNLHHATKIDAVQLAAKALGKELSLVMV

Download         Length: 417 bp

>AT137878 NZ_CP043211:c2661477-2661061 [Escherichia coli O16:H48]
ATGCGTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGAC
CCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATA
ACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCACGATCACTTTATTGAAGTACCTTTGAGCGTCGCCTCTAAGGTA
TTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCAAGAGTTAGCCAGGCGAATTGGCAAACCTAAACAGGAGAT
TACTCGCCTATTTAACTTGCATCATGCGACAAAAATCGACGCCGTCCAGCTCGCGGCAAAGGCGCTTGGCAAAGAGTTAT
CGCTGGTGATGGTTTAA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
PDB 6HPB


Antitoxin

Source ID Structure

References