Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1959988..1960259 | Replicon | chromosome |
| Accession | NZ_CP043203 | ||
| Organism | Escherichia coli O16:H48 strain PG20180058 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1960118..1960221 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1959988..1960259 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYA09_RS09390 | 1956543..1957205 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FYA09_RS09395 | 1957229..1957885 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FYA09_RS09400 | 1957987..1958217 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FYA09_RS09405 | 1958356..1958730 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FYA09_RS09410 | 1958734..1959606 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| FYA09_RS09415 | 1959619..1959960 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1959988..1960259 | - | 272 | - | - | Antitoxin |
| - | 1960118..1960221 | + | 104 | - | - | Toxin |
| FYA09_RS09420 | 1960356..1961012 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| FYA09_RS09425 | 1961013..1961204 | - | 192 | WP_000457842.1 | YebW family protein | - |
| FYA09_RS09430 | 1961309..1961545 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FYA09_RS09435 | 1961663..1963102 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T137736 NZ_CP043203:1960118-1960221 [Escherichia coli O16:H48]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT137736 NZ_CP043203:c1960259-1959988 [Escherichia coli O16:H48]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
