Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3939736..3940007 | Replicon | chromosome |
| Accession | NZ_CP043197 | ||
| Organism | Escherichia coli O16:H48 strain PG20180061 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3939866..3939969 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3939736..3940007 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYA12_RS19040 | 3936291..3936953 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FYA12_RS19045 | 3936977..3937633 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FYA12_RS19050 | 3937735..3937965 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FYA12_RS19055 | 3938104..3938478 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FYA12_RS19060 | 3938482..3939354 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| FYA12_RS19065 | 3939367..3939708 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 3939736..3940007 | - | 272 | - | - | Antitoxin |
| - | 3939866..3939969 | + | 104 | - | - | Toxin |
| FYA12_RS19070 | 3940104..3940760 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| FYA12_RS19075 | 3940761..3940952 | - | 192 | WP_000457842.1 | YebW family protein | - |
| FYA12_RS19080 | 3941057..3941293 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FYA12_RS19085 | 3941411..3942850 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T137634 NZ_CP043197:3939866-3939969 [Escherichia coli O16:H48]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT137634 NZ_CP043197:c3940007-3939736 [Escherichia coli O16:H48]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
