Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | IV | Classification (family/domain) | yafW-ykfI/CbtA-CbeA |
Location | 3578999..3579678 | Replicon | chromosome |
Accession | NZ_CP043187 | ||
Organism | Escherichia coli O16:H48 strain PG20180170 |
Toxin (Protein)
Gene name | ykfI | Uniprot ID | P77692 |
Locus tag | FYA17_RS17565 | Protein ID | WP_000854672.1 |
Coordinates | 3578999..3579340 (-) | Length | 114 a.a. |
Antitoxin (Protein)
Gene name | yafW | Uniprot ID | Q47684 |
Locus tag | FYA17_RS17570 | Protein ID | WP_000070395.1 |
Coordinates | 3579361..3579678 (-) | Length | 106 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
FYA17_RS23050 | 3574585..3574677 | + | 93 | Protein_3418 | sigma factor-binding protein Crl | - |
FYA17_RS17545 | 3574716..3575771 | - | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
FYA17_RS17550 | 3576059..3577162 | + | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
FYA17_RS17555 | 3577174..3578427 | + | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
FYA17_RS17565 | 3578999..3579340 | - | 342 | WP_000854672.1 | type IV toxin-antitoxin system toxin YkfI | Toxin |
FYA17_RS17570 | 3579361..3579678 | - | 318 | WP_000070395.1 | type IV toxin-antitoxin system antitoxin YafW | Antitoxin |
FYA17_RS17575 | 3579697..3579918 | - | 222 | WP_000691994.1 | DUF987 domain-containing protein | - |
FYA17_RS17580 | 3579927..3580403 | - | 477 | WP_000811693.1 | RadC family protein | - |
FYA17_RS17585 | 3580419..3580877 | - | 459 | WP_000211838.1 | antirestriction protein | - |
FYA17_RS17590 | 3580975..3581214 | - | 240 | WP_000194654.1 | DUF905 domain-containing protein | - |
FYA17_RS17595 | 3581291..3581758 | - | 468 | WP_001547765.1 | hypothetical protein | - |
FYA17_RS17600 | 3581781..3582224 | - | 444 | WP_000824223.1 | hypothetical protein | - |
FYA17_RS17605 | 3582224..3582451 | - | 228 | WP_001548158.1 | hypothetical protein | - |
FYA17_RS17610 | 3582447..3582638 | - | 192 | Protein_3431 | DeoR family transcriptional regulator | - |
FYA17_RS17615 | 3582855..3583676 | - | 822 | WP_000197389.1 | DUF945 domain-containing protein | - |
FYA17_RS17620 | 3583768..3584631 | - | 864 | WP_001065553.1 | GTPase family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 114 a.a. Molecular weight: 12905.01 Da Isoelectric Point: 9.6543
>T137482 WP_000854672.1 NZ_CP043187:c3579340-3578999 [Escherichia coli O16:H48]
MKTLPAITQRAVKPCLSPVAVWQMLLTRLLEQHYGLTINDTPFCNEAVIKEHIDAGITLADAVNFLVEKYELVRIDRKGF
SWQEQSPYLRAADILRARQATGLLRQSRNNVVR
MKTLPAITQRAVKPCLSPVAVWQMLLTRLLEQHYGLTINDTPFCNEAVIKEHIDAGITLADAVNFLVEKYELVRIDRKGF
SWQEQSPYLRAADILRARQATGLLRQSRNNVVR
Download Length: 342 bp
>T137482 NZ_CP043187:c3579340-3578999 [Escherichia coli O16:H48]
ATGAAAACTTTACCTGCAATAACTCAGCGGGCGGTGAAGCCCTGCCTGTCACCCGTGGCTGTCTGGCAAATGTTACTGAC
ACGTCTGCTGGAACAGCACTATGGTCTGACAATAAACGACACGCCATTCTGCAATGAGGCTGTGATTAAGGAACACATCG
ATGCCGGTATCACCCTAGCCGATGCCGTGAATTTTCTGGTAGAAAAATACGAGCTGGTTCGTATCGACAGGAAGGGATTT
AGCTGGCAGGAACAATCTCCTTATCTCCGGGCTGCAGACATTCTGCGAGCGCGGCAGGCAACTGGCTTGTTGCGGCAAAG
CCGTAACAACGTAGTACGATGA
ATGAAAACTTTACCTGCAATAACTCAGCGGGCGGTGAAGCCCTGCCTGTCACCCGTGGCTGTCTGGCAAATGTTACTGAC
ACGTCTGCTGGAACAGCACTATGGTCTGACAATAAACGACACGCCATTCTGCAATGAGGCTGTGATTAAGGAACACATCG
ATGCCGGTATCACCCTAGCCGATGCCGTGAATTTTCTGGTAGAAAAATACGAGCTGGTTCGTATCGACAGGAAGGGATTT
AGCTGGCAGGAACAATCTCCTTATCTCCGGGCTGCAGACATTCTGCGAGCGCGGCAGGCAACTGGCTTGTTGCGGCAAAG
CCGTAACAACGTAGTACGATGA
Antitoxin
Download Length: 106 a.a. Molecular weight: 11939.59 Da Isoelectric Point: 6.7391
>AT137482 WP_000070395.1 NZ_CP043187:c3579678-3579361 [Escherichia coli O16:H48]
MSNPTRGLQREITLRLGARLVQEGNRLHYLADRASITGKFSDIECRKLDETFPHFILQMESMLTTGELSPHHAHCVTLYH
NDLTCEADTLGSCGYVYIAIYPTQR
MSNPTRGLQREITLRLGARLVQEGNRLHYLADRASITGKFSDIECRKLDETFPHFILQMESMLTTGELSPHHAHCVTLYH
NDLTCEADTLGSCGYVYIAIYPTQR
Download Length: 318 bp
>AT137482 NZ_CP043187:c3579678-3579361 [Escherichia coli O16:H48]
ATGAGCAACCCTACCAGGGGCCTGCAGCGGGAGATTACACTGCGCCTGGGAGCCCGTCTGGTGCAGGAAGGCAACCGACT
GCATTATCTGGCTGACCGGGCCAGCATCACCGGCAAGTTCAGTGACATCGAATGCCGGAAGCTGGATGAAACATTCCCGC
ACTTTATCCTCCAGATGGAATCGATGCTGACCACCGGTGAACTCAGCCCCCACCATGCCCACTGCGTTACCCTGTACCAC
AACGATTTAACCTGCGAAGCCGACACCCTTGGCAGTTGCGGCTACGTATACATCGCCATTTACCCCACTCAGCGTTAA
ATGAGCAACCCTACCAGGGGCCTGCAGCGGGAGATTACACTGCGCCTGGGAGCCCGTCTGGTGCAGGAAGGCAACCGACT
GCATTATCTGGCTGACCGGGCCAGCATCACCGGCAAGTTCAGTGACATCGAATGCCGGAAGCTGGATGAAACATTCCCGC
ACTTTATCCTCCAGATGGAATCGATGCTGACCACCGGTGAACTCAGCCCCCACCATGCCCACTGCGTTACCCTGTACCAC
AACGATTTAACCTGCGAAGCCGACACCCTTGGCAGTTGCGGCTACGTATACATCGCCATTTACCCCACTCAGCGTTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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