Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 654010..654281 | Replicon | chromosome |
| Accession | NZ_CP043185 | ||
| Organism | Escherichia coli O16:H48 strain PG20180171 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 654048..654151 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 654010..654281 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYA18_RS03270 | 651167..652606 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FYA18_RS03275 | 652724..652960 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FYA18_RS03280 | 653065..653256 | + | 192 | WP_000457842.1 | YebW family protein | - |
| FYA18_RS03285 | 653257..653913 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 654010..654281 | + | 272 | - | - | Antitoxin |
| - | 654048..654151 | - | 104 | - | - | Toxin |
| FYA18_RS03290 | 654309..654650 | - | 342 | WP_000976476.1 | YebY family protein | - |
| FYA18_RS03295 | 654663..655535 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| FYA18_RS03300 | 655539..655913 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FYA18_RS03305 | 656052..656282 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FYA18_RS03310 | 656384..657040 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FYA18_RS03315 | 657064..657726 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T137429 NZ_CP043185:c654151-654048 [Escherichia coli O16:H48]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT137429 NZ_CP043185:654010-654281 [Escherichia coli O16:H48]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
