Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 277105..277373 | Replicon | chromosome |
| Accession | NZ_CP043181 | ||
| Organism | Escherichia coli O2:H6 strain PG20180057 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 277143..277245 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 277105..277373 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYA20_RS01420 | 274262..275701 | + | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FYA20_RS01425 | 275819..276055 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FYA20_RS01430 | 276160..276351 | + | 192 | WP_001317886.1 | YebW family protein | - |
| FYA20_RS01435 | 276352..277008 | - | 657 | WP_000812742.1 | protein-serine/threonine phosphatase | - |
| - | 277105..277373 | + | 269 | - | - | Antitoxin |
| - | 277143..277245 | - | 103 | - | - | Toxin |
| FYA20_RS01440 | 277403..277744 | - | 342 | WP_000976472.1 | YebY family protein | - |
| FYA20_RS01445 | 277757..278629 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| FYA20_RS01450 | 278633..279007 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FYA20_RS01455 | 279146..279376 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FYA20_RS01460 | 279478..280134 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| FYA20_RS01465 | 280157..280819 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T137361 NZ_CP043181:c277245-277143 [Escherichia coli O2:H6]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT137361 NZ_CP043181:277105-277373 [Escherichia coli O2:H6]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
