Detailed information of TA system TA137301

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-StbC
• Location: 1504320..1504981
• Replicon: chromosome
• Accession: NZ_CP043139
• Organism: Bordetella parapertussis strain H581

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: Q7WAH5
• Locus tag: FYA76_RS07140
• Protein ID: WP_003812073.1
• Coordinates: 1504320..1504745 (-)
• Length: 142 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: -
• Locus tag: FYA76_RS07145
• Protein ID: WP_003812071.1
• Coordinates: 1504742..1504981 (-)
• Length: 80 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FYA76_RS07120	1500134..1501111	+	978	WP_003812083.1	tripartite tricarboxylate transporter substrate binding protein	-
FYA76_RS07125	1501132..1501644	-	513	WP_010928017.1	hypothetical protein	-
FYA76_RS07130	1502143..1503648	+	1506	WP_010928018.1	tripartite tricarboxylate transporter permease	-
FYA76_RS07135	1503746..1504210	-	465	WP_003812075.1	MarR family transcriptional regulator	-
FYA76_RS07140	1504320..1504745	-	426	WP_003812073.1	PIN domain-containing protein	Toxin
FYA76_RS07145	1504742..1504981	-	240	WP_003812071.1	Arc family DNA-binding protein	Antitoxin
FYA76_RS07150	1505055..1505897	-	843	WP_010928019.1	AraC family transcriptional regulator	-
FYA76_RS07155	1506035..1506580	+	546	WP_010928020.1	peroxidase-related enzyme	-
FYA76_RS07160	1506639..1507151	+	513	WP_003812062.1	redoxin domain-containing protein	-
FYA76_RS07165	1507232..1507465	+	234	WP_033447224.1	DUF2945 domain-containing protein	-
FYA76_RS07170	1507462..1508022	+	561	WP_010928021.1	DUF488 domain-containing protein	-
FYA76_RS07175	1508100..1509146	+	1047	WP_010928022.1	Dyp-type peroxidase	-
FYA76_RS07180	1509143..1509946	+	804	WP_003812055.1	bacteriocin family protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (2-121)

Antitoxin

• Arc-like DNA binding domain (9-46)

Sequences

Toxin

Protein

• Length: 142 a.a.
• Molecular weight: 14811.22 Da
• Isoelectric Point: 6.3704

>T137301 WP_003812073.1 NZ_CP043139:c1504745-1504320 [Bordetella parapertussis]
MILLDTDVLLEPLRPAPDPAVAAWLDAQHVETLYLAAPGAAEIQLGLARLPRGKRAEALRHEFERRVLPLFMGHVLPFDT
AAADAYAAVMMRAAAAGHALCAIDGCIAAIATAHGLAIATRHPARFEAAGLAAVDPWHAAA

Nucleotide

• Length: 426 bp

>T137301 NZ_CP043139:c1504745-1504320 [Bordetella parapertussis]
ATGATCCTGCTCGACACCGACGTGCTGCTCGAGCCGCTGCGGCCGGCCCCCGACCCGGCCGTCGCGGCATGGCTGGATGC
CCAGCACGTCGAAACCCTGTACCTGGCCGCGCCCGGCGCGGCCGAAATCCAGCTCGGGCTGGCCCGCCTGCCGCGCGGCA
AGCGGGCCGAGGCCTTGCGCCACGAATTCGAGCGGCGCGTCCTGCCGCTGTTCATGGGCCATGTCCTGCCCTTCGACACG
GCCGCGGCCGATGCCTACGCCGCCGTCATGATGCGGGCCGCGGCGGCGGGCCATGCGCTGTGCGCAATCGATGGTTGCAT
CGCCGCCATCGCCACCGCGCACGGCCTGGCCATCGCCACGCGCCATCCGGCCAGGTTCGAGGCGGCCGGGCTCGCCGCCG
TCGATCCCTGGCACGCCGCCGCTTGA

Antitoxin

Protein

• Length: 80 a.a.
• Molecular weight: 8561.78 Da
• Isoelectric Point: 11.5658

>AT137301 WP_003812071.1 NZ_CP043139:c1504981-1504742 [Bordetella parapertussis]
VSSITVRNVPEEVHRALRVRAATHGRSTEAEIRAILENAVLPDGRVKLGTLLSHIGRGARGMDLTIERNPAPARPASFE

Nucleotide

• Length: 240 bp

>AT137301 NZ_CP043139:c1504981-1504742 [Bordetella parapertussis]
GTGTCTTCGATTACGGTAAGAAATGTTCCCGAGGAAGTGCATCGCGCCTTGCGCGTACGCGCGGCCACGCATGGGCGCAG
CACCGAGGCCGAGATCCGCGCCATCCTGGAAAACGCCGTGCTGCCCGATGGCCGCGTCAAGCTGGGCACCCTGCTCAGCC
ACATCGGCCGCGGCGCGCGCGGCATGGACCTGACCATCGAGCGCAATCCGGCGCCCGCTCGCCCGGCCAGCTTCGAATGA

Structures

Toxin

• AlphaFold DB: Q7WAH5