Detailed information of TA system TA137283

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): hicAB/HicA-HicB
• Location: 2238602..2239196
• Replicon: chromosome
• Accession: NZ_CP043117
• Organism: Bordetella parapertussis strain I267

Toxin (Protein)

• Gene name: hicA
• Uniprot ID: K0M8J0
• Locus tag: FYA99_RS10465
• Protein ID: WP_010928352.1
• Coordinates: 2238602..2238784 (+)
• Length: 61 a.a.

Antitoxin (Protein)

• Gene name: hicB
• Uniprot ID: K0MFV7
• Locus tag: FYA99_RS10470
• Protein ID: WP_010928351.1
• Coordinates: 2238807..2239196 (+)
• Length: 130 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FYA99_RS10445	2233605..2234345	+	741	WP_003809659.1	carbonic anhydrase	-
FYA99_RS10450	2234357..2235712	-	1356	WP_003809657.1	cytochrome c	-
FYA99_RS10455	2235723..2237492	-	1770	WP_010928353.1	GMC family oxidoreductase	-
FYA99_RS10460	2237496..2238194	-	699	WP_003809653.1	gluconate 2-dehydrogenase subunit 3 family protein	-
FYA99_RS10465	2238602..2238784	+	183	WP_010928352.1	type II toxin-antitoxin system HicA family toxin	Toxin
FYA99_RS10470	2238807..2239196	+	390	WP_010928351.1	type II toxin-antitoxin system HicB family antitoxin	Antitoxin
FYA99_RS10480	2239462..2240238	-	777	WP_033448479.1	phosphate ABC transporter ATP-binding protein PstB	-
FYA99_RS10485	2240283..2241140	-	858	WP_003809638.1	phosphate ABC transporter permease PstA	-
FYA99_RS10490	2241162..2242178	-	1017	WP_010928350.1	phosphate ABC transporter permease subunit PstC	-
FYA99_RS10495	2242313..2243353	-	1041	WP_003809635.1	phosphate ABC transporter substrate-binding protein PstS	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• HicA mRNA interferase family (4-59)

Antitoxin

• HicB-like antitoxin of toxin-antitoxin system (3-122)

Sequences

Toxin

Protein

• Length: 61 a.a.
• Molecular weight: 6750.76 Da
• Isoelectric Point: 11.4018

>T137283 WP_010928352.1 NZ_CP043117:2238602-2238784 [Bordetella parapertussis]
MNSTDLIQQPKADGWYRVHTVGSHHQYKHPTKPGKVTVPHPRKGLPTATQRSILKQAGLR

Nucleotide

• Length: 183 bp

>T137283 NZ_CP043117:2238602-2238784 [Bordetella parapertussis]
ATGAACAGCACAGACCTGATCCAGCAACCGAAGGCCGACGGCTGGTATCGCGTGCATACCGTGGGTTCACACCACCAGTA
CAAGCACCCGACCAAGCCCGGCAAGGTCACCGTGCCGCATCCCAGGAAGGGCCTGCCGACAGCGACACAGCGCAGCATCC
TTAAGCAAGCCGGCCTGCGATAA

Antitoxin

Protein

• Length: 130 a.a.
• Molecular weight: 14270.92 Da
• Isoelectric Point: 4.3014

>AT137283 WP_010928351.1 NZ_CP043117:2238807-2239196 [Bordetella parapertussis]
MLYPIHVSKDEGSAYGAAFPDFPGCFAAADELQDLPRAAQEAVEAHFYGETERIPAPSAPEAWANDEDYQGGYWMMVDID
LSKVNTKAVRLNISLPENLVHRIDEEAKARRLSRSAFLAMAAEHEMADA

Nucleotide

• Length: 390 bp

>AT137283 NZ_CP043117:2238807-2239196 [Bordetella parapertussis]
ATGCTCTACCCGATCCATGTTTCCAAAGACGAAGGCAGCGCCTACGGGGCCGCCTTCCCTGATTTTCCCGGCTGCTTTGC
AGCCGCCGATGAACTCCAGGACCTCCCCCGCGCGGCGCAGGAAGCCGTTGAGGCGCACTTCTACGGAGAGACCGAGCGTA
TCCCCGCCCCGTCCGCCCCTGAAGCGTGGGCCAACGATGAGGACTATCAAGGCGGCTATTGGATGATGGTCGATATCGAC
CTGTCGAAGGTCAACACGAAGGCCGTGCGGCTCAACATCAGCCTGCCGGAAAACCTGGTTCACCGTATCGACGAGGAAGC
CAAGGCACGACGCCTTTCGCGCTCAGCGTTTCTGGCCATGGCTGCGGAGCACGAAATGGCCGACGCCTAG

Structures

Toxin

• AlphaFold DB: K0M8J0

Antitoxin

• AlphaFold DB: K0MFV7