Detailed information of TA system TA137248

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): hicAB/HicA-HicB
• Location: 2225618..2226212
• Replicon: chromosome
• Accession: NZ_CP043110
• Organism: Bordetella parapertussis strain I458

Toxin (Protein)

• Gene name: hicA
• Uniprot ID: K0M8J0
• Locus tag: FYB07_RS10620
• Protein ID: WP_010928352.1
• Coordinates: 2226030..2226212 (-)
• Length: 61 a.a.

Antitoxin (Protein)

• Gene name: hicB
• Uniprot ID: K0MFV7
• Locus tag: FYB07_RS10615
• Protein ID: WP_010928351.1
• Coordinates: 2225618..2226007 (-)
• Length: 130 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FYB07_RS10590	2221461..2222501	+	1041	WP_003809635.1	phosphate ABC transporter substrate-binding protein PstS	-
FYB07_RS10595	2222636..2223652	+	1017	WP_010928350.1	phosphate ABC transporter permease subunit PstC	-
FYB07_RS10600	2223674..2224531	+	858	WP_003809638.1	phosphate ABC transporter permease PstA	-
FYB07_RS10605	2224576..2225352	+	777	WP_033448479.1	phosphate ABC transporter ATP-binding protein PstB	-
FYB07_RS10615	2225618..2226007	-	390	WP_010928351.1	type II toxin-antitoxin system HicB family antitoxin	Antitoxin
FYB07_RS10620	2226030..2226212	-	183	WP_010928352.1	type II toxin-antitoxin system HicA family toxin	Toxin
FYB07_RS10625	2226620..2227318	+	699	WP_003809653.1	gluconate 2-dehydrogenase subunit 3 family protein	-
FYB07_RS10630	2227322..2229091	+	1770	WP_010928353.1	GMC family oxidoreductase	-
FYB07_RS10635	2229102..2230457	+	1356	WP_003809657.1	cytochrome c	-
FYB07_RS10640	2230469..2231209	-	741	WP_003809659.1	carbonic anhydrase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• HicA mRNA interferase family (4-59)

Antitoxin

• HicB-like antitoxin of toxin-antitoxin system (3-122)

Sequences

Toxin

Protein

• Length: 61 a.a.
• Molecular weight: 6750.76 Da
• Isoelectric Point: 11.4018

>T137248 WP_010928352.1 NZ_CP043110:c2226212-2226030 [Bordetella parapertussis]
MNSTDLIQQPKADGWYRVHTVGSHHQYKHPTKPGKVTVPHPRKGLPTATQRSILKQAGLR

Nucleotide

• Length: 183 bp

>T137248 NZ_CP056622:2373656-2373832 [Citrobacter freundii]
GTGAAGCAAAGTGAGTTTAGACGCTGGCTTGAATCTCAGGGAGTTGCTGTTACAAACGGCTCAAATCATCTGAAACTGAG
ATATCAGGGAAGGCGTAGCGTTATGCCCAGACATCCAGGTGATGAAATAAAAGAAGCCTTGCGAAAAGCGATTATTAAGC
AGCTTGACTTACAGTAA

Antitoxin

Protein

• Length: 130 a.a.
• Molecular weight: 14270.92 Da
• Isoelectric Point: 4.3014

>AT137248 WP_010928351.1 NZ_CP043110:c2226007-2225618 [Bordetella parapertussis]
MLYPIHVSKDEGSAYGAAFPDFPGCFAAADELQDLPRAAQEAVEAHFYGETERIPAPSAPEAWANDEDYQGGYWMMVDID
LSKVNTKAVRLNISLPENLVHRIDEEAKARRLSRSAFLAMAAEHEMADA

Nucleotide

• Length: 390 bp

>AT137248 NZ_CP043110:c2226007-2225618 [Bordetella parapertussis]
ATGCTCTACCCGATCCATGTTTCCAAAGACGAAGGCAGCGCCTACGGGGCCGCCTTCCCTGATTTTCCCGGCTGCTTTGC
AGCCGCCGATGAACTCCAGGACCTCCCCCGCGCGGCGCAGGAAGCCGTTGAGGCGCACTTCTACGGAGAGACCGAGCGTA
TCCCCGCCCCGTCCGCCCCTGAAGCGTGGGCCAACGATGAGGACTATCAAGGCGGCTATTGGATGATGGTCGATATCGAC
CTGTCGAAGGTCAACACGAAGGCCGTGCGGCTCAACATCAGCCTGCCGGAAAACCTGGTTCACCGTATCGACGAGGAAGC
CAAGGCACGACGCCTTTCGCGCTCAGCGTTTCTGGCCATGGCTGCGGAGCACGAAATGGCCGACGCCTAG

Structures

Toxin

• AlphaFold DB: K0M8J0

Antitoxin

• AlphaFold DB: K0MFV7