Detailed information of TA system TA137137

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-StbC
• Location: 3162635..3163296
• Replicon: chromosome
• Accession: NZ_CP043084
• Organism: Bordetella parapertussis strain J292

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: Q7WAH5
• Locus tag: FYB39_RS14975
• Protein ID: WP_003812073.1
• Coordinates: 3162871..3163296 (+)
• Length: 142 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: -
• Locus tag: FYB39_RS14970
• Protein ID: WP_003812071.1
• Coordinates: 3162635..3162874 (+)
• Length: 80 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FYB39_RS14935	3157670..3158473	-	804	WP_003812055.1	bacteriocin family protein	-
FYB39_RS14940	3158470..3159516	-	1047	WP_010928022.1	Dyp-type peroxidase	-
FYB39_RS14945	3159594..3160154	-	561	WP_010928021.1	DUF488 domain-containing protein	-
FYB39_RS14950	3160151..3160384	-	234	WP_033447224.1	DUF2945 domain-containing protein	-
FYB39_RS14955	3160465..3160977	-	513	WP_003812062.1	redoxin domain-containing protein	-
FYB39_RS14960	3161036..3161581	-	546	WP_010928020.1	peroxidase-related enzyme	-
FYB39_RS14965	3161719..3162561	+	843	WP_010928019.1	AraC family transcriptional regulator	-
FYB39_RS14970	3162635..3162874	+	240	WP_003812071.1	Arc family DNA-binding protein	Antitoxin
FYB39_RS14975	3162871..3163296	+	426	WP_003812073.1	PIN domain-containing protein	Toxin
FYB39_RS14980	3163406..3163870	+	465	WP_003812075.1	MarR family transcriptional regulator	-
FYB39_RS14985	3163968..3165473	-	1506	WP_010928018.1	tripartite tricarboxylate transporter permease	-
FYB39_RS14990	3165972..3166484	+	513	WP_010928017.1	hypothetical protein	-
FYB39_RS14995	3166505..3167482	-	978	WP_003812083.1	tripartite tricarboxylate transporter substrate binding protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (2-121)

Antitoxin

• Arc-like DNA binding domain (9-46)

Sequences

Toxin

Protein

• Length: 142 a.a.
• Molecular weight: 14811.22 Da
• Isoelectric Point: 6.3704

>T137137 WP_003812073.1 NZ_CP043084:3162871-3163296 [Bordetella parapertussis]
MILLDTDVLLEPLRPAPDPAVAAWLDAQHVETLYLAAPGAAEIQLGLARLPRGKRAEALRHEFERRVLPLFMGHVLPFDT
AAADAYAAVMMRAAAAGHALCAIDGCIAAIATAHGLAIATRHPARFEAAGLAAVDPWHAAA

Nucleotide

• Length: 426 bp

>T137137 NZ_CP043084:3162871-3163296 [Bordetella parapertussis]
ATGATCCTGCTCGACACCGACGTGCTGCTCGAGCCGCTGCGGCCGGCCCCCGACCCGGCCGTCGCGGCATGGCTGGATGC
CCAGCACGTCGAAACCCTGTACCTGGCCGCGCCCGGCGCGGCCGAAATCCAGCTCGGGCTGGCCCGCCTGCCGCGCGGCA
AGCGGGCCGAGGCCTTGCGCCACGAATTCGAGCGGCGCGTCCTGCCGCTGTTCATGGGCCATGTCCTGCCCTTCGACACG
GCCGCGGCCGATGCCTACGCCGCCGTCATGATGCGGGCCGCGGCGGCGGGCCATGCGCTGTGCGCAATCGATGGTTGCAT
CGCCGCCATCGCCACCGCGCACGGCCTGGCCATCGCCACGCGCCATCCGGCCAGGTTCGAGGCGGCCGGGCTCGCCGCCG
TCGATCCCTGGCACGCCGCCGCTTGA

Antitoxin

Protein

• Length: 80 a.a.
• Molecular weight: 8561.78 Da
• Isoelectric Point: 11.5658

>AT137137 WP_003812071.1 NZ_CP043084:3162635-3162874 [Bordetella parapertussis]
VSSITVRNVPEEVHRALRVRAATHGRSTEAEIRAILENAVLPDGRVKLGTLLSHIGRGARGMDLTIERNPAPARPASFE

Nucleotide

• Length: 240 bp

>AT137137 NZ_CP056517:140590-140829 [Citrobacter freundii]
ATGCAGGCTACAGCTGCTCGCCAGAAAAAAACCGTCAGTGTCACCCTTGAGCCAATGCTCGTACAGCAGGCAAAAGACGC
TGGGATTAACTTGTCCGCCACGCTGGCAGAAGCGCTTCAGAGCAAACTGAAGGCCAGTGCAGCGGAAGAATGGAAACGAC
AGAATCGTGCTGGTATTCAGGAGTTGAACCGCATCACTGAAGAGCATGGGTTACTGTCTGACGAATACAGGACGTTCTGA

Structures

Toxin

• AlphaFold DB: Q7WAH5