Detailed information of TA system TA137062

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-StbC
• Location: 3162624..3163285
• Replicon: chromosome
• Accession: NZ_CP043067
• Organism: Bordetella parapertussis strain J711

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: Q7WAH5
• Locus tag: FYB58_RS14975
• Protein ID: WP_003812073.1
• Coordinates: 3162860..3163285 (+)
• Length: 142 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: -
• Locus tag: FYB58_RS14970
• Protein ID: WP_003812071.1
• Coordinates: 3162624..3162863 (+)
• Length: 80 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FYB58_RS14935	3157659..3158462	-	804	WP_003812055.1	bacteriocin family protein	-
FYB58_RS14940	3158459..3159505	-	1047	WP_010928022.1	Dyp-type peroxidase	-
FYB58_RS14945	3159583..3160143	-	561	WP_010928021.1	DUF488 domain-containing protein	-
FYB58_RS14950	3160140..3160373	-	234	WP_033447224.1	DUF2945 domain-containing protein	-
FYB58_RS14955	3160454..3160966	-	513	WP_003812062.1	redoxin domain-containing protein	-
FYB58_RS14960	3161025..3161570	-	546	WP_010928020.1	peroxidase-related enzyme	-
FYB58_RS14965	3161708..3162550	+	843	WP_010928019.1	AraC family transcriptional regulator	-
FYB58_RS14970	3162624..3162863	+	240	WP_003812071.1	Arc family DNA-binding protein	Antitoxin
FYB58_RS14975	3162860..3163285	+	426	WP_003812073.1	PIN domain-containing protein	Toxin
FYB58_RS14980	3163395..3163859	+	465	WP_003812075.1	MarR family transcriptional regulator	-
FYB58_RS14985	3163957..3165462	-	1506	WP_010928018.1	tripartite tricarboxylate transporter permease	-
FYB58_RS14990	3165961..3166473	+	513	WP_010928017.1	hypothetical protein	-
FYB58_RS14995	3166494..3167471	-	978	WP_003812083.1	tripartite tricarboxylate transporter substrate binding protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (2-121)

Antitoxin

• Arc-like DNA binding domain (9-46)

Sequences

Toxin

Protein

• Length: 142 a.a.
• Molecular weight: 14811.22 Da
• Isoelectric Point: 6.3704

>T137062 WP_003812073.1 NZ_CP043067:3162860-3163285 [Bordetella parapertussis]
MILLDTDVLLEPLRPAPDPAVAAWLDAQHVETLYLAAPGAAEIQLGLARLPRGKRAEALRHEFERRVLPLFMGHVLPFDT
AAADAYAAVMMRAAAAGHALCAIDGCIAAIATAHGLAIATRHPARFEAAGLAAVDPWHAAA

Nucleotide

• Length: 426 bp

>T137062 NZ_CP043067:3162860-3163285 [Bordetella parapertussis]
ATGATCCTGCTCGACACCGACGTGCTGCTCGAGCCGCTGCGGCCGGCCCCCGACCCGGCCGTCGCGGCATGGCTGGATGC
CCAGCACGTCGAAACCCTGTACCTGGCCGCGCCCGGCGCGGCCGAAATCCAGCTCGGGCTGGCCCGCCTGCCGCGCGGCA
AGCGGGCCGAGGCCTTGCGCCACGAATTCGAGCGGCGCGTCCTGCCGCTGTTCATGGGCCATGTCCTGCCCTTCGACACG
GCCGCGGCCGATGCCTACGCCGCCGTCATGATGCGGGCCGCGGCGGCGGGCCATGCGCTGTGCGCAATCGATGGTTGCAT
CGCCGCCATCGCCACCGCGCACGGCCTGGCCATCGCCACGCGCCATCCGGCCAGGTTCGAGGCGGCCGGGCTCGCCGCCG
TCGATCCCTGGCACGCCGCCGCTTGA

Antitoxin

Protein

• Length: 80 a.a.
• Molecular weight: 8561.78 Da
• Isoelectric Point: 11.5658

>AT137062 WP_003812071.1 NZ_CP043067:3162624-3162863 [Bordetella parapertussis]
VSSITVRNVPEEVHRALRVRAATHGRSTEAEIRAILENAVLPDGRVKLGTLLSHIGRGARGMDLTIERNPAPARPASFE

Nucleotide

• Length: 240 bp

>AT137062 NZ_CP043067:3162624-3162863 [Bordetella parapertussis]
GTGTCTTCGATTACGGTAAGAAATGTTCCCGAGGAAGTGCATCGCGCCTTGCGCGTACGCGCGGCCACGCATGGGCGCAG
CACCGAGGCCGAGATCCGCGCCATCCTGGAAAACGCCGTGCTGCCCGATGGCCGCGTCAAGCTGGGCACCCTGCTCAGCC
ACATCGGCCGCGGCGCGCGCGGCATGGACCTGACCATCGAGCGCAATCCGGCGCCCGCTCGCCCGGCCAGCTTCGAATGA

Structures

Toxin

• AlphaFold DB: Q7WAH5