Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5559815..5559960 | Replicon | chromosome |
| Accession | NZ_CP043047 | ||
| Organism | Klebsiella pneumoniae strain KLP268 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5559822..5559924 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5559815..5559960 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FXN60_RS27600 | 5555347..5556780 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FXN60_RS27605 | 5556896..5557135 | + | 240 | WP_002911393.1 | YebV family protein | - |
| FXN60_RS27610 | 5557233..5557424 | + | 192 | WP_002911395.1 | YebW family protein | - |
| FXN60_RS27615 | 5557421..5558074 | - | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| FXN60_RS27620 | 5558231..5559199 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FXN60_RS27625 | 5559304..5559447 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 5559815..5559960 | + | 146 | - | - | Antitoxin |
| - | 5559822..5559924 | - | 103 | - | - | Toxin |
| FXN60_RS27635 | 5560083..5560421 | - | 339 | WP_002911404.1 | YebY family protein | - |
| FXN60_RS27640 | 5560438..5561307 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| FXN60_RS27645 | 5561311..5561685 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FXN60_RS27650 | 5561798..5562028 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FXN60_RS27655 | 5562107..5562766 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FXN60_RS27660 | 5562770..5564830 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T137008 NZ_CP043047:c5559924-5559822 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT137008 NZ_CP043047:5559815-5559960 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
