Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2096956..2097099 | Replicon | chromosome |
| Accession | NZ_CP043009 | ||
| Organism | Citrobacter portucalensis strain WCHCP085039 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2096991..2097094 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2096956..2097099 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FXN82_RS10740 | 2093403..2094065 | - | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| FXN82_RS10745 | 2094089..2094745 | - | 657 | WP_003833801.1 | carbon-nitrogen hydrolase family protein | - |
| FXN82_RS10750 | 2094852..2095082 | - | 231 | WP_003833800.1 | DNA polymerase III subunit theta | - |
| FXN82_RS10755 | 2095226..2095600 | + | 375 | WP_148361865.1 | CopC domain-containing protein YobA | - |
| FXN82_RS10760 | 2095604..2096476 | + | 873 | WP_148361866.1 | copper homeostasis membrane protein CopD | - |
| FXN82_RS10765 | 2096497..2096835 | + | 339 | WP_003833793.1 | YebY family protein | - |
| - | 2096956..2097099 | - | 144 | - | - | Antitoxin |
| - | 2096991..2097094 | + | 104 | - | - | Toxin |
| FXN82_RS10770 | 2097248..2097889 | + | 642 | WP_148361867.1 | protein-serine/threonine phosphatase | - |
| FXN82_RS10775 | 2097890..2098081 | - | 192 | WP_103771172.1 | YebW family protein | - |
| FXN82_RS10780 | 2098184..2098420 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| FXN82_RS10785 | 2098521..2099942 | - | 1422 | WP_148361868.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T136938 NZ_CP043009:2096991-2097094 [Citrobacter portucalensis]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT136938 NZ_CP043009:c2097099-2096956 [Citrobacter portucalensis]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
