Detailed information of TA system TA136881

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/RelE(toxin)
• Location: 481862..482343
• Replicon: chromosome
• Accession: NZ_CP042992
• Organism: Histophilus somni strain UOC-KLM-ATR-013

Toxin (Protein)

• Gene name: relE
• Uniprot ID: -
• Locus tag: FWK61_RS02245
• Protein ID: WP_165942816.1
• Coordinates: 481862..482122 (-)
• Length: 87 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: -
• Locus tag: FWK61_RS02250
• Protein ID: WP_011608602.1
• Coordinates: 482122..482343 (-)
• Length: 74 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FWK61_RS02225	477916..479256	+	1341	WP_075321653.1	PTS sugar transporter subunit IIC	-
FWK61_RS02230	479322..479741	+	420	WP_075321652.1	pseudouridine synthase	-
FWK61_RS02235	480226..481683	+	1458	WP_132994700.1	DUF560 domain-containing protein	-
FWK61_RS02245	481862..482122	-	261	WP_165942816.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
FWK61_RS02250	482122..482343	-	222	WP_011608602.1	hypothetical protein	Antitoxin
FWK61_RS02255	482406..482504	+	99	Protein_433	IS200/IS605 family transposase	-
FWK61_RS02260	482780..484679	+	1900	Protein_434	transferrin-binding protein-like solute binding protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (4-86)

Antitoxin

• Protein of unknown function DUF6290 (1-70)

Sequences

Toxin

Protein

• Length: 87 a.a.
• Molecular weight: 10128.82 Da
• Isoelectric Point: 10.1365

>T136881 WP_165942816.1 NZ_CP042992:c482122-481862 [Histophilus somni]
MYTLRYSDKALKQLCKLDKGTQKLILTWIANNLENCENPRIKGKGLTRNRSGEWRYRVGDYRIICDIRDSELIILALSIG
HRKNIY

Nucleotide

• Length: 261 bp

>T136881 NZ_CP042992:c482122-481862 [Histophilus somni]
ATGTACACTTTACGGTATAGTGATAAGGCGTTGAAGCAATTATGCAAGCTTGATAAAGGCACACAAAAGTTGATTTTGAC
TTGGATAGCAAATAACTTAGAGAACTGCGAAAATCCAAGAATAAAAGGCAAAGGACTTACTAGGAATCGAAGTGGAGAAT
GGCGGTATAGAGTAGGCGACTATCGGATTATTTGTGATATACGAGATAGTGAATTGATAATACTTGCCTTGTCTATTGGA
CACAGGAAAAATATTTATTAG

Antitoxin

Protein

• Length: 74 a.a.
• Molecular weight: 8515.60 Da
• Isoelectric Point: 4.4142

>AT136881 WP_011608602.1 NZ_CP042992:c482343-482122 [Histophilus somni]
MAISVRLNAQDEQLFKSYAKTNNITLSELFRNAVFEKIEDEYDLAVYRESLEDYNKTPMSYSHAEVCKMLGIE

Nucleotide

• Length: 222 bp

>AT136881 NZ_CP042992:c482343-482122 [Histophilus somni]
ATGGCTATTTCAGTAAGACTAAACGCTCAAGACGAGCAATTATTTAAGTCCTATGCAAAAACAAATAATATTACGCTATC
CGAACTGTTCAGGAATGCCGTTTTTGAAAAAATCGAAGATGAATATGACCTTGCAGTATATCGTGAGTCTTTGGAAGACT
ACAACAAAACCCCAATGAGTTATTCTCACGCAGAGGTATGCAAGATGTTAGGAATTGAGTGA