Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1866670..1866815 | Replicon | chromosome |
| Accession | NZ_CP042977 | ||
| Organism | Klebsiella pneumoniae strain KPN55602 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1866706..1866808 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1866670..1866815 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FVE92_RS10950 | 1861800..1863860 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| FVE92_RS10955 | 1863864..1864523 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FVE92_RS10960 | 1864602..1864832 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FVE92_RS10965 | 1864945..1865319 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FVE92_RS10970 | 1865323..1866192 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| FVE92_RS10975 | 1866209..1866547 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1866670..1866815 | - | 146 | - | - | Antitoxin |
| - | 1866706..1866808 | + | 103 | - | - | Toxin |
| FVE92_RS10980 | 1867182..1867325 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| FVE92_RS10985 | 1867430..1868398 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FVE92_RS10990 | 1868555..1869208 | + | 654 | WP_004189273.1 | protein-serine/threonine phosphatase | - |
| FVE92_RS10995 | 1869205..1869396 | - | 192 | WP_002911395.1 | YebW family protein | - |
| FVE92_RS11000 | 1869494..1869733 | - | 240 | WP_002911393.1 | YebV family protein | - |
| FVE92_RS11005 | 1869849..1871282 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T136816 NZ_CP042977:1866706-1866808 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT136816 NZ_CP042977:c1866815-1866670 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
