Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2118908..2119179 | Replicon | chromosome |
| Accession | NZ_CP042973 | ||
| Organism | Escherichia coli strain CFSAN061768 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2119038..2119141 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2118908..2119179 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA694_RS10145 | 2115463..2116125 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CA694_RS10150 | 2116149..2116805 | - | 657 | WP_116319175.1 | carbon-nitrogen hydrolase family protein YobB | - |
| CA694_RS10155 | 2116907..2117137 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CA694_RS10160 | 2117276..2117650 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CA694_RS10165 | 2117654..2118526 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| CA694_RS10170 | 2118539..2118880 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2118908..2119179 | - | 272 | - | - | Antitoxin |
| - | 2119038..2119141 | + | 104 | - | - | Toxin |
| CA694_RS10175 | 2119276..2119932 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| CA694_RS10180 | 2119933..2120124 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CA694_RS10185 | 2120229..2120465 | - | 237 | WP_001295499.1 | YebV family protein | - |
| CA694_RS10190 | 2120583..2122022 | - | 1440 | WP_049068043.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2111598..2135730 | 24132 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T136788 NZ_CP042973:2119038-2119141 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT136788 NZ_CP042973:c2119179-2118908 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
