Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2083592..2083863 | Replicon | chromosome |
| Accession | NZ_CP042969 | ||
| Organism | Escherichia coli strain CFSAN061769 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2083722..2083825 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2083592..2083863 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA697_RS10020 | 2080147..2080809 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CA697_RS10025 | 2080833..2081489 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| CA697_RS10030 | 2081591..2081821 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CA697_RS10035 | 2081960..2082334 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| CA697_RS10040 | 2082338..2083210 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| CA697_RS10045 | 2083223..2083564 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2083592..2083863 | - | 272 | - | - | Antitoxin |
| - | 2083722..2083825 | + | 104 | - | - | Toxin |
| CA697_RS10050 | 2083960..2084615 | + | 656 | Protein_1966 | protein-serine/threonine phosphatase | - |
| CA697_RS10055 | 2084616..2084807 | - | 192 | WP_000457842.1 | YebW family protein | - |
| CA697_RS10060 | 2084912..2085148 | - | 237 | WP_001295499.1 | YebV family protein | - |
| CA697_RS10065 | 2085266..2086705 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T136754 NZ_CP042969:2083722-2083825 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT136754 NZ_CP042969:c2083863-2083592 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
