Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) rlegTA/AbiEii-AbiEi
Location 7974496..7976030 Replicon chromosome
Accession NZ_CP042968
Organism Bradyrhizobium paxllaeri strain LMTR 21

Toxin (Protein)


Gene name rlegT Uniprot ID -
Locus tag LMTR21_RS38120 Protein ID WP_065752366.1
Coordinates 7975110..7976030 (+) Length 307 a.a.

Antitoxin (Protein)


Gene name rlegA Uniprot ID -
Locus tag LMTR21_RS38115 Protein ID WP_065752365.1
Coordinates 7974496..7975110 (+) Length 205 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LMTR21_RS38100 7969720..7969950 - 231 WP_187399277.1 transposase -
LMTR21_RS38105 7969919..7970383 - 465 WP_141688244.1 transposase -
LMTR21_RS38110 7970349..7974404 - 4056 WP_210250607.1 helix-turn-helix domain-containing protein -
LMTR21_RS38115 7974496..7975110 + 615 WP_065752365.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein Antitoxin
LMTR21_RS38120 7975110..7976030 + 921 WP_065752366.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein Toxin
LMTR21_RS38125 7976115..7979891 + 3777 WP_141688245.1 hypothetical protein -
LMTR21_RS38130 7980234..7980473 - 240 WP_065752368.1 helix-turn-helix domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Nucleotidyl transferase AbiEii toxin, Type IV TA system

(38-272)

Antitoxin

Transcriptional regulator, AbiEi antitoxin

(15-57)


Sequences

Toxin        


Download         Length: 307 a.a.        Molecular weight: 34570.73 Da        Isoelectric Point: 6.2556

>T136745 WP_065752366.1 NZ_CP042968:7975110-7976030 [Bradyrhizobium paxllaeri]
MAKVLRNPAASIRARLLAHARQHNDDYQRILTRYAIERLLFRLSLTEAAGRYVLKGAMLFVTWPEHVFRPTGDLDLLGQG
DSDPAAITELFSRICQVEAPDDGIIFDRASLRVEQVREEDKYQGVRLSLRGELARAMIPVQVDIGFGDHVYPRPTRHIFP
SLLPDLPAANILMYPPETVVAEKFEAMIRFGVTNGRIKDFYDIWVTLRTFPFDLSGLVEAVGGTLRRRETAIPAEMPVGL
MDEFARITEERGHWTGFLRRNPPTIEPPPFAELQVELRRFFGPVIDGLAVPEGAQGRWDPAAGAWQ

Download         Length: 921 bp

>T136745 NZ_CP042968:7975110-7976030 [Bradyrhizobium paxllaeri]
ATGGCCAAGGTCCTCAGGAATCCTGCGGCGTCGATCAGGGCGCGCCTACTTGCTCACGCCAGACAGCACAATGACGACTA
TCAGCGCATCCTGACGCGTTATGCGATCGAGCGGCTGCTCTTCCGTCTCAGCCTGACGGAAGCCGCCGGGAGATACGTGC
TCAAGGGTGCGATGCTGTTTGTGACCTGGCCGGAGCACGTCTTCAGGCCAACCGGCGACCTCGACCTCCTCGGCCAAGGT
GACTCCGACCCCGCCGCAATTACTGAGCTCTTCAGCCGAATTTGCCAAGTGGAAGCCCCGGACGACGGCATCATCTTCGA
TCGAGCCAGCTTGAGGGTCGAGCAGGTGCGTGAAGAGGACAAGTATCAGGGCGTCCGGCTGAGCCTCAGGGGCGAACTGG
CAAGGGCGATGATTCCAGTCCAGGTCGACATTGGTTTCGGCGATCACGTCTACCCGCGACCGACACGCCATATTTTTCCG
AGCCTTTTGCCGGACCTGCCGGCGGCGAACATCCTGATGTACCCGCCCGAAACCGTCGTCGCAGAGAAGTTCGAGGCGAT
GATCCGCTTCGGGGTGACAAATGGCAGGATCAAGGATTTCTATGATATCTGGGTCACGCTCCGTACATTTCCATTCGACC
TGTCGGGACTGGTGGAGGCCGTCGGCGGAACGCTTCGCCGACGAGAGACCGCCATCCCGGCCGAGATGCCTGTAGGCTTG
ATGGACGAGTTCGCGAGGATCACCGAAGAACGCGGTCATTGGACCGGCTTCCTTCGCCGAAATCCGCCGACGATCGAGCC
ACCACCTTTTGCGGAGCTTCAGGTGGAGCTGCGACGCTTCTTCGGTCCCGTGATCGACGGCCTCGCCGTGCCGGAAGGCG
CCCAGGGTCGATGGGATCCGGCCGCCGGAGCTTGGCAGTAA

Antitoxin


Download         Length: 205 a.a.        Molecular weight: 22646.37 Da        Isoelectric Point: 10.3927

>AT136745 WP_065752365.1 NZ_CP042968:7974496-7975110 [Bradyrhizobium paxllaeri]
MAERHINHRQNALSLIRDRGIARARDFKAAGIPLVYLKRMTDAGDIVRLGRGLYQIPEGVGEDIAHDLAEAVRLVPNGVV
SLVSALRHHELTTQLPHAVWMTIPHKARTPNIKGLRLEIVRATGAVLTAGVDHLRVEGVDVPIYGVAKTIADCFKHRRHV
GEDVAIEALRDALRLRKTTASELMKYAAIDRVTARIEPYIKAMQ

Download         Length: 615 bp

>AT136745 NZ_CP042968:7974496-7975110 [Bradyrhizobium paxllaeri]
ATGGCTGAACGTCATATAAATCATCGTCAGAACGCACTCAGTCTCATCCGAGATCGAGGAATTGCGCGCGCACGCGATTT
CAAGGCGGCAGGCATCCCGCTGGTCTATCTGAAACGCATGACCGATGCCGGCGACATTGTCCGTCTCGGCCGCGGCCTTT
ACCAAATCCCTGAAGGAGTCGGCGAGGATATCGCCCACGATCTGGCGGAAGCGGTGCGCCTCGTGCCGAACGGAGTCGTC
AGCCTGGTCAGCGCACTTCGCCACCACGAACTGACCACCCAGCTCCCGCACGCAGTGTGGATGACCATACCTCACAAAGC
CCGGACACCAAACATCAAGGGCCTGCGGCTCGAGATTGTCCGCGCGACAGGCGCAGTCCTTACCGCGGGCGTCGACCATC
TTCGAGTCGAAGGAGTTGATGTGCCGATCTACGGCGTTGCGAAAACAATCGCCGATTGCTTCAAACATCGCCGCCACGTT
GGCGAGGATGTCGCGATCGAGGCGCTCCGAGACGCCCTGCGGCTCCGGAAGACCACGGCGAGCGAGCTCATGAAATATGC
GGCCATCGATCGGGTCACCGCACGGATTGAGCCCTACATCAAGGCGATGCAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References