Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 723996..724264 | Replicon | chromosome |
| Accession | NZ_CP042946 | ||
| Organism | Escherichia fergusonii strain ATCC 35470 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 724034..724137 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 723996..724264 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABH49_RS03490 | 721154..722593 | + | 1440 | WP_105283742.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ABH49_RS03495 | 722711..722947 | + | 237 | WP_002431586.1 | DUF1480 family protein | - |
| ABH49_RS03500 | 723052..723243 | + | 192 | WP_046081774.1 | YebW family protein | - |
| ABH49_RS03505 | 723244..723900 | - | 657 | WP_105283702.1 | protein-serine/threonine phosphatase | - |
| - | 723996..724264 | + | 269 | - | - | Antitoxin |
| - | 724034..724137 | - | 104 | - | - | Toxin |
| ABH49_RS03510 | 724294..724635 | - | 342 | WP_105283701.1 | YebY family protein | - |
| ABH49_RS03515 | 724647..725519 | - | 873 | WP_105283700.1 | copper homeostasis membrane protein CopD | - |
| ABH49_RS03520 | 725522..725896 | - | 375 | WP_105283699.1 | CopC domain-containing protein YobA | - |
| ABH49_RS03525 | 726035..726265 | + | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| ABH49_RS03530 | 726372..727028 | + | 657 | WP_105283698.1 | carbon-nitrogen hydrolase family protein | - |
| ABH49_RS03535 | 727052..727714 | + | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T136711 NZ_CP042946:c724137-724034 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT136711 NZ_CP042946:723996-724264 [Escherichia fergusonii]
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
